| ACi1q | Ascertainment correction piece for univariate sampling | 
| ACi2q | Ascertainment correction piece for bivariate sampling | 
| acml.lmem | Fitting function: ACML for a linear mixed effects model... | 
| acml.lmem2 | Fitting function: ACML or WL for a linear mixed effects model... | 
| CreateSubjectData | Create a list of subject-specific data | 
| li.lme | Calculate a subject-specific contribution to a log-likelihood... | 
| li.lme.score | Subject specific contribution to the lme model score (also... | 
| li.lme.score2 | Subject specific contribution to the lme model score (also... | 
| logACi1q | Log of the Ascertainment correction for univariate sampling | 
| logACi1q.score | Gradient of the log of the ascertainment correction piece for... | 
| logACi1q.score2 | Gradient of the log of the ascertainment correction piece for... | 
| logACi2q | Log of the Ascertainment correction piece for bivariate... | 
| logACi2q.score | Gradient of the log of the ascertainment correction piece for... | 
| logACi2q.score2 | Gradient of the log of the ascertainment correction piece for... | 
| LogLikeC | Calculate the conditional likelihood for the univariate and... | 
| LogLikeC2 | Calculate the conditional likelihood for the univariate and... | 
| LogLikeCAndScore | Calculate the ascertainment corrected log likelihood and... | 
| LogLikeCAndScore2 | Calculate the ascertainment corrected log likelihood and... | 
| LogLikeC.score | Calculate the gradient of the conditional likelihood for the... | 
| LogLikeC.Score2 | Calculate the gradient of the conditional likelihood for the... | 
| LogLikeiC | Calculate the ss contributions to the conditional likelihood... | 
| LogLikeiC2 | Calculate the ss contributions to the conditional likelihood... | 
| odsBiv | Bivariate Test Data | 
| odsInt | Intercept Test Data | 
| odsSlp | Slope Test Data | 
| vi.calc | Calculate V_i = Z_i D t(Z_i) + sig_e^2 I_n_i | 
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