Man pages for schmic05/ISH_package
R package for the calculation of the following Intra-Sample Heterogeneity Scores in Bisulfite Sequencing Data: FDRP, qFDRP, PDR, Epipolymorphism, Methylation Entropy and MHL

calculate.entropycalculate.entropy
calculate.epipolymorphismcalculate.epipolymorphism
calculate.fdrpcalculate.fdrp
calculate.fdrp.by.chromosomecalculate.fdrp.by.chromosome This function calculates the...
calculate.fdrp.scorecalculate.fdrp.score
calculate.fdrp.sitecalculate.fdrp.site This function compute the FDRP score for...
calculate.mhlcalculate.mhl
calculate.pdrcalculate.pdr
calculate.pdr.by.chromosomecalculate.pdr.by.chromosome
calculate.pdr.sitecalculate.pdr.site This function computes the PDR score for a...
calculate.qfdrpcalculate.qfdrp
classify.readclassify.read This functions classifies a read into either...
compute.discordantcompute.discordant This function decides for a given read...
compute.scorecompute.score
compute.score.GRangescompute.score.GRanges
compute.score.rnbcompute.score.rnb
create.genomebrowser.trackcreate.genomebrowser.track
get.optionget.option Print the value of the global option
ish.run.exampleish.run.example
restrictcompute.discordant This function restricts a read to those...
rnb.calculate.fdrprnb.calculate.fdrp
rnb.calculate.mhlrnb.calculate.mhl
rnb.calculate.pdrrnb.calculate.pdr
rnb.calculate.qfdrprnb.calculate.qfdrp
run.haplotype.calculationrun.haplotype.calculation
run.methclonerun.methclone
run.mhl.calculationrun.mhl.calculation
set.optionset.option
VALID.SCORESmain.R
schmic05/ISH_package documentation built on Nov. 19, 2018, 7:54 a.m.