API for schmic05/ISH_package
R package for the calculation of the following Intra-Sample Heterogeneity Scores in Bisulfite Sequencing Data: FDRP, qFDRP, PDR, Epipolymorphism, Methylation Entropy and MHL

Global functions
VALID.SCORES Man page
anno.split Source code
calculate.entropy Man page Source code
calculate.entropy.line Source code
calculate.epipoly.line Source code
calculate.epipolymorphism Man page Source code
calculate.fdrp Man page Source code
calculate.fdrp.by.chromosome Man page Source code
calculate.fdrp.score Man page Source code
calculate.fdrp.site Man page Source code
calculate.mhl Man page Source code
calculate.pdr Man page Source code
calculate.pdr.by.chromosome Man page Source code
calculate.pdr.site Man page Source code
calculate.qfdrp Man page Source code
classify.read Man page Source code
compute.discordant Man page Source code
compute.score Man page Source code
compute.score.GRanges Man page Source code
compute.score.rnb Man page Source code
convert Source code
create.annotation Source code
get.option Man page Source code
ish.check.validity Source code
ish.run.example Man page Source code
remove.sex.chromosomes Source code
restrict Man page Source code
rnb.calculate.fdrp Man page Source code
rnb.calculate.mhl Man page Source code
rnb.calculate.pdr Man page Source code
rnb.calculate.qfdrp Man page Source code
run.haplotype.calculation Man page Source code
run.methclone Man page Source code
run.mhl.calculation Man page Source code
set.option Man page Source code
toCpGs Source code
schmic05/ISH_package documentation built on June 10, 2018, 11:16 a.m.