calculate.pdr.by.chromosome: calculate.pdr.by.chromosome
In schmic05/WSH_package: R package for the calculation of the following Within-Sample Heterogeneity Scores in Bisulfite Sequencing Data: FDRP, qFDRP, PDR, Epipolymorphism, Methylation Entropy and MHL
Description
Usage
Arguments
Value
Author(s)
View source: R/calculate_scores.R
Description
This function calculates the PDR scores for the reads given in the bam files
for the CpGs present in the annotation.
Usage
1
calculate.pdr.by.chromosome(bam, anno)
Arguments
bam
bam file with the reads from a bisulfite sequencing technique
already aligned to a reference genome
anno
annotation as a GRanges object with the CpG sites to be analyzed
Value
vector of pdr scores for the given CpG sites in anno
Author(s)
Michael Scherer
schmic05/WSH_package documentation built on March 6, 2021, 2:34 a.m.
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Description Usage Arguments Value Author(s)
View source: R/calculate_scores.R
Description
This function calculates the PDR scores for the reads given in the bam files for the CpGs present in the annotation.
Usage
1 | calculate.pdr.by.chromosome(bam, anno)
|
Arguments
bam |
bam file with the reads from a bisulfite sequencing technique already aligned to a reference genome |
anno |
annotation as a GRanges object with the CpG sites to be analyzed |
Value
vector of pdr scores for the given CpG sites in anno
Author(s)
Michael Scherer
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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