Description Usage Arguments Value Author(s)
View source: R/calculate_scores.R
This function calculates the PDRs for all analyzed CpG sites in the bam file of the corresponding sample
1 2 3 4 5 6 7 | calculate.pdr(
bam.file,
anno,
log.path = getwd(),
cores = 1,
use.sex.chromosomes = FALSE
)
|
bam.file |
bath to the bam file to be analyzed already aligned to a reference genome |
anno |
annotation as a GRanges object with the CpG sites to be analyzed |
log.path |
location of the log file |
cores |
number of cores available for the analysis |
use.sex.chromosomes |
Flag indicating if scores are also to be computed for the sex chromosomes |
PDR scores for the given annotation.
Michael Scherer
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