Description Usage Arguments Value See Also
This is the constructor for objects of class 'CVMomics'. It
is used in calculate_cvm
to construct the return value.
1 |
data |
A matrix containing genomics data (e.g. gene expression levels). The rownames should contain gene identifiers, while the column names should contain sample identifiers. |
outcomes |
A vector of group labels for each of the sample identifiers. The
names of this vector must correspond to the column names of |
cvm |
A matrix containing a row for each gene in
The row names should specify the gene identifiers for each row. |
cvm.perm |
A matrix containing a row for each gene in |
pairwise.cvm.table |
A table containing the CVM scores for each pairwise comparison for each gene. For a two-class problem, there should be only one column comparing class 1 and class 2. The row names should be gene identifiers. The column names should be in the format "<class 1> vs <class 2>" (e.g. "1 vs 2" or "A vs B"). |
pairwise.q.table |
A table containing the permutation-based q-values for each
pairwise comparison for each gene. May be |
The function combines its arguments in a list, which is assigned class 'CVMomics'. The resulting object is returned.
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