API for schuyler-smith/phylosmith
Functions to help analyze data as phyloseq objects
| Global functions | |
|---|---|
| ADDNA | Source code |
| CI_ellipse | Man page Source code |
| CUT | Source code |
| Correlation | Man page Source code |
| abundance_heatmap | Man page Source code |
| abundance_lines | Man page Source code |
| alpha_diversity_graph | Man page Source code |
| arrange_co_occurrence_table | Man page Source code |
| assign_rank | Man page Source code |
| bin | Man page Source code |
| change_labels | Man page Source code |
| check_TaR | Man page Source code |
| check_args | Source code |
| check_boolean | Source code |
| check_boolean_or_frequency | Source code |
| check_classification | Source code |
| check_co_occurrence_table | Source code |
| check_colors | Source code |
| check_cores | Source code |
| check_frequency | Source code |
| check_index_classification | Man page Source code |
| check_index_treatment | Man page Source code |
| check_n | Source code |
| check_options | Source code |
| check_permuted_rhos | Source code |
| check_phyloseq | Source code |
| check_phyloseq_object | Source code |
| check_positive_numeric | Source code |
| check_string | Source code |
| check_strings | Source code |
| check_subset | Source code |
| check_treatment | Source code |
| co_occurrence | Man page Source code |
| co_occurrence_network | Man page Source code |
| common_taxa | Man page Source code |
| conglomerate_samples | Man page Source code |
| conglomerate_taxa | Man page Source code |
| create_palette | Man page Source code |
| curate_co_occurrence | Man page Source code |
| dendrogram_phyloseq | Man page Source code |
| histogram_permuted_rhos | Man page Source code |
| ia_lakes | Man page |
| library_size | Man page Source code |
| melt_phyloseq | Man page Source code |
| merge_treatments | Man page Source code |
| mock_phyloseq | Man page |
| mock_phyloseq_2 | Man page |
| network_layout_ps | Man page |
| network_ps | Man page Source code |
| nmds_phyloseq | Man page Source code |
| pcoa_phyloseq | Man page Source code |
| permute_rho | Man page Source code |
| permute_rho_Rcpp | Man page Source code |
| phylogeny_profile | Man page Source code |
| phyloparts | Source code |
| phylosmith | Man page |
| quantile_permuted_rhos | Man page Source code |
| relative_abundance | Man page Source code |
| return_parts | Source code |
| set_sample_order | Man page Source code |
| set_treatment_levels | Man page Source code |
| soil_column | Man page |
| taxa_abundance_bars | Man page Source code |
| taxa_core | Man page Source code |
| taxa_core_graph | Man page Source code |
| taxa_extract | Man page Source code |
| taxa_filter | Man page Source code |
| taxa_proportions | Man page Source code |
| taxa_prune | Man page Source code |
| theme_schuy | Source code |
| tsne_phyloseq | Man page |
| unique_taxa | Man page Source code |
| variable_correlation | Man page Source code |
| variable_correlation_heatmap | Man page Source code |
| variable_correlation_network | Man page Source code |
