permute_rho_Rcpp: Co-occurrence rho calculations
In schuyler-smith/phylosmith: Functions to help analyze data as phyloseq objects
permute_rho_Rcpp R Documentation
Co-occurrence rho calculations
Description
Calculates the pair-wise Spearman rank correlation without
testing for significance.
Usage
permute_rho_Rcpp(count_matrix, permuted_matrix, method, ncores)
Arguments
count_matrix
An otu_table in the format from
phyloseq
permuted_matrix
An otu_table in the format from
phyloseq
method
pearson, spearman
ncores
An int for how many cores to use to multithread the
calculations.
Value
A vector with rho values for each pair-wise correlation.
Author(s)
Schuyler D. Smith
See Also
permute_rho
schuyler-smith/phylosmith documentation built on Feb. 6, 2025, 1:56 p.m.
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| permute_rho_Rcpp | R Documentation |
Co-occurrence rho calculations
Description
Calculates the pair-wise Spearman rank correlation without testing for significance.
Usage
permute_rho_Rcpp(count_matrix, permuted_matrix, method, ncores)
Arguments
count_matrix |
An |
permuted_matrix |
An |
method |
pearson, spearman |
ncores |
An |
Value
A vector with rho values for each pair-wise correlation.
Author(s)
Schuyler D. Smith
See Also
permute_rho
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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