curate_co_occurrence: Curate co-occurrence data. Function from the...
In schuyler-smith/phylosmith: Functions to help analyze data as phyloseq objects

curate_co_occurrence

R Documentation

Curate co-occurrence data. Function from the phylosmith-package.

Used to curate a co-occurrence table from the co_occurrence function. Takes a list of taxa and finds all pairs containing any of those taxa.

curate_co_occurrence(co_occurrence_table, taxa_of_interest,
number_of_treatments = 1)

`co_occurrence_table`	Table of the co-occurrence of taxa/genes in the `phyloseq_obj`, computed using `co_occurrence`.
`taxa_of_interest`	A list or vector of taxa names, like those generated with `unique_taxa`.
`number_of_treatments`	How many treatments should the taxa of interest be seen in? Requires `integer` or 'all' (default = 1).

data.table