gplotMat: Plots network as adjacency matrix.

In schw4b/multdyn: Dynamic Graphical Models

Description

Plots network as adjacency matrix.

Usage

gplotMat(
  adj,
  title = NULL,
  colMapLabel = NULL,
  hasColMap = NULL,
  lim = c(0, 1),
  gradient = c("white", "orange", "red"),
  nodeLabels = waiver(),
  axisTextSize = 12,
  xAngle = 0,
  titleTextSize = 12,
  barWidth = 1,
  textSize = 12
)

Arguments

adj	2D adjacency matrix.
title	title.
colMapLabel	label for colormap.
hasColMap	FALSE turns off color map, default is NULL (on).
lim	vector with min and max value, data outside this range will be removed.
gradient	gradient colors.
nodeLabels	node labels.
axisTextSize	text size of the y and x tick labels.
xAngle	orientation of the x tick labels.
titleTextSize	text size of the title.
barWidth	width of the colorbar.
textSize	width of the colorbar.

Examples

# Generate some sample binary 5-node network structures for N=20, then compute
# proportion at each edge
N=20
x = array(rbinom(n=5*5*N, size=1, prob=0.30), dim=c(5,5,N))
A = apply(x, c(1,2), mean)

gplotMat(A, title = "network", colMapLabel = '%', barWidth = 0.3)

schw4b/multdyn documentation built on Dec. 14, 2021, 7:39 a.m.