plot_ggdendro: plot_ggdendro

In schyen/OCMSExplorer: OCMSlooksy

plot_ggdendro

Description

use ggplot to make customized dendrogram. following https://atrebas.github.io/post/2019-06-08-lightweight-dendrograms/

Usage

plot_ggdendro(
  hcdata,
  metadata,
  direction = c("lr", "rl", "tb", "bt"),
  fan = FALSE,
  branch.size = 1,
  label.size = 3,
  label.category = NULL,
  nudge.label = 0.01,
  expand.y = 0.5,
  category = NULL,
  id = "sampleID"
)

Arguments

hcdata	dendrogram data
metadata	dataframe containing metadata used to annotate dendrogram
direction	direction of level tob-bottom ('tb'), bottom-top ('bt'), left-right ('lr'), right-left ('rl')
fan	fan the dendrogram
branch.size	branch size
label.size	label size
label.category	colour label by
nudge.label	nudge label spacing
expand.y	expand y axis limit to this value
category	colour dendrogram leaves by
id	variable to label dendrogram by

schyen/OCMSExplorer documentation built on Feb. 15, 2023, 4:39 p.m.