Files in schyen/OCMSExplorer
OCMSlooksy
.gitignore
CODE_OF_CONDUCT.md
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/app_config.R
R/app_server.R
R/app_ui.R
R/cms_biplot.R
R/cms_dendro.R
R/cms_helper.R
R/cms_palette.R
R/cms_rarefy.R
R/create_db.R
R/metfile_init.R
R/mod_aggregate.R
R/mod_alpha.R
R/mod_beta.R
R/mod_diff_abund.R
R/mod_download.R
R/mod_filterfeat.R
R/mod_import.R
R/mod_intro.R
R/mod_ov_diss.R
R/mod_ov_hmap.R
R/mod_ov_pca.R
R/mod_ov_pcoa.R
R/mod_ov_permanova.R
R/mod_profile.R
R/mod_prop.R
R/mod_qc.R
R/mod_qualityfilter.R
R/mod_report.R
R/mod_transform.R
R/run_app.R
README.md
app.R
data-raw/._DSS_DB
data-raw/._dss_metadata.tsv
data-raw/DSS_DB
data-raw/dss_metadata.tsv
data-raw/example_data.R
data/example_data.RData
inst/app/www/custom.css
inst/app/www/favicon.ico
inst/app_config.R
inst/golem-config.yml
inst/rmarkdown/templates/alpha_report/skeleton/skeleton.Rmd
inst/rmarkdown/templates/alpha_report/template.yaml
inst/rmarkdown/templates/beta_report/skeleton/skeleton.Rmd
inst/rmarkdown/templates/beta_report/template.yaml
inst/rmarkdown/templates/diffabund_report/skeleton/skeleton.Rmd
inst/rmarkdown/templates/diffabund_report/template.yaml
inst/rmarkdown/templates/diffabund_report/template.yaml~
inst/rmarkdown/templates/feat_report/skeleton/skeleton.Rmd
inst/rmarkdown/templates/feat_report/template.yaml
inst/rmarkdown/templates/profile_report/skeleton/skeleton.Rmd
inst/rmarkdown/templates/profile_report/template.yaml
inst/rmarkdown/templates/qc_report/skeleton/skeleton.Rmd
inst/rmarkdown/templates/qc_report/template.yaml
inst/shinyApp/app.R
man/cms_biplot.Rd
man/cms_palette.Rd
man/cms_rarefy.Rd
man/create_db.Rd
man/dendro_data_k.Rd
man/metfile_init.Rd
man/mod_import.Rd
man/mod_intro.Rd
man/mod_ov_hmap.Rd
man/mod_ov_pca.Rd
man/mod_ov_pcoa.Rd
man/mod_qc.Rd
man/myDownloadBttn.Rd
man/plot_ggdendro.Rd
man/run_app.Rd
man/set_labels_params.Rd
man/withBusyIndicatorServer.Rd
man/withBusyIndicatorUI.Rd
vignettes/OCMSlooksy.Rmd
vignettes/screenshots/QCreport.png
vignettes/screenshots/aggregatefeat1.png
vignettes/screenshots/aggregatefeat2.png
vignettes/screenshots/aggregatefeat3.png
vignettes/screenshots/alphadiversity1.png
vignettes/screenshots/alphadiversity2.png
vignettes/screenshots/alphadiversity3.png
vignettes/screenshots/betadiv-pca1.png
vignettes/screenshots/betadiv-pca2.png
vignettes/screenshots/betadiv-pca3.png
vignettes/screenshots/betadiv-pca4.png
vignettes/screenshots/betadiv-pca5.png
vignettes/screenshots/betadiv-pca6.png
vignettes/screenshots/betadiv-pca7.png
vignettes/screenshots/betadiv-pcoa1.png
vignettes/screenshots/betadiv-pcoa2.png
vignettes/screenshots/betadiv-pcoa3.png
vignettes/screenshots/betadiv-pcoa4.png
vignettes/screenshots/betadiv-pcoa5.png
vignettes/screenshots/betadiv-pcoa6.png
vignettes/screenshots/betadiv-permanova1.png
vignettes/screenshots/betadiv-permanova2.png
vignettes/screenshots/betadiv-permanova3.png
vignettes/screenshots/betadiversity1.png
vignettes/screenshots/diffabund1.png
vignettes/screenshots/diffabund2.png
vignettes/screenshots/diffabund3.png
vignettes/screenshots/diffabund4.png
vignettes/screenshots/diffabund5.png
vignettes/screenshots/diffabund6.png
vignettes/screenshots/diffabund7.png
vignettes/screenshots/examplecount.png
vignettes/screenshots/exampledataframe.png
vignettes/screenshots/examplemetadata.png
vignettes/screenshots/exampletaxonomy.png
vignettes/screenshots/filterSample1.png
vignettes/screenshots/filterSample2.png
vignettes/screenshots/filterfeature1.png
vignettes/screenshots/filterfeature2.png
vignettes/screenshots/filterfeature3.png
vignettes/screenshots/filterfeature4.png
vignettes/screenshots/filterfeature5.png
vignettes/screenshots/import1.png
vignettes/screenshots/import2.png
vignettes/screenshots/interactiveplots.png
vignettes/screenshots/intro.png
vignettes/screenshots/microbiomeprofile1.png
vignettes/screenshots/microbiomeprofile2.png
vignettes/screenshots/microbiomeprofile3.png
vignettes/screenshots/microbiomeprofile4.png
vignettes/screenshots/profilesparsity1.png
vignettes/screenshots/profilesparsity2.png
vignettes/screenshots/propr1.png
vignettes/screenshots/propr2.png
vignettes/screenshots/propr3.png
vignettes/screenshots/propr4.png
vignettes/screenshots/propr5.png
vignettes/screenshots/propr6.png
vignettes/screenshots/propr7.png
vignettes/screenshots/propr8.png
vignettes/screenshots/sampledissimilarity1.png
vignettes/screenshots/sampledissimilarity2.png
vignettes/screenshots/sampledissimilarity3.png
vignettes/screenshots/saveplot.png
vignettes/screenshots/savetable.png
vignettes/screenshots/transformCount.png
vignettes/screenshots/workflow.png
