en_download: Download data

In sckott/egnar: European Nucleotide Archive Client

Description

Download data

Usage

en_download(id = NULL, result = NULL, format = "xml", limit = NULL,
  offset = NULL, max = NULL, read = TRUE, ...)

Arguments

id	(character) Ids of various sorts, combine in a vector for > 1
result	(character) result option, one of: sequence_release, assembly, ...
format	(character) data format, one of xml (default), fasta, text, fastq
limit	(integer) Number of results to return
offset	(integer) Result number to start at
max	(integer) Max results
...	Curl options passed to GET

Details

caching using rappdirs

Value

file path as character string, or parsed data

References

http://www.ebi.ac.uk/ena/browse/data-retrieval-rest

Examples

## Not run: 
en_download(id = 'Taxon:4235', limit = 10)
en_download(id = 'Taxon:4235', limit = 10, read = FALSE)
en_download(id = 'A00145', format = "fasta")
en_download(id = 'A00145', format = "fastq")
en_download(id = 'A00145', format = "text")
en_download(id = c('Taxon:4235', 'Taxon:6543'))
en_download(id = c('Taxon:4235', 'Taxon:6543'), read = FALSE)

## End(Not run)

sckott/egnar documentation built on May 29, 2019, 3:59 p.m.