Man pages for sckott/treeshape
treeshape fxns
| edgelist2matrix | Make a matrix from an edgelist on file. |
| fastBM | Written by Liam J. Revell 2011 From the phytools package... |
| getnetmets | Calculate network metrics on matrices. |
| getnetmets2 | Calculate network metrics on matrices. |
| nodeHeights | Written by Liam J. Revell 2011 From the phytools package... |
| pbtree | Written by Liam J. Revell 2011 From the phytools package... |
| randtips | Random traits - randomize traits across tips - shuffles... |
| req | Easy require/library. |
| simbal | Simulate balanced and unbalanced trees. |
| simbal_plot | Plotting output from simbaltrees |
| simbaltrees | Simulate a set of balanced and unbalanced trees. |
| simbaltrees_topy | Simulate a set of balanced and unbalanced trees. |
| sim_rand_nets | Measure aspects of traits on trees. |
| sim_traits_nets | Simulate networks, with interactions propoprtional to trait... |
| sim_traits_nets2 | Simulate networks, with interactions propoprtional to trait... |
| sim_traits_nets_par | Simulate networks, with interactions propoprtional to trait... |
| sim_traits_ontrees | Simulate traits on trees with various evolutionary models. |
| traitsig | Measure aspects of traits on trees. |
