Files in scottzijiezhang/RADAR
RADAR
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
License.txt
NAMESPACE
R/.DS_Store
R/AllGenerics.R
R/MeRIP_class.R
R/RcppExports.R
R/countIntronReads.R
R/countReads.R
R/countReadsCarRNA.R
R/countReadsFromBam.R
R/gtfToGeneModel.R
R/initialization.R
R/methods.R
R/other_methods.R
R/plotGeneCov.R
R/plotPCA.DESeq2.R
RADAR.Rproj
README.md
anRpackage/DESCRIPTION
anRpackage/NAMESPACE
anRpackage/R/RcppExports.R
anRpackage/Read-and-delete-me
anRpackage/man/anRpackage-package.Rd
anRpackage/man/rcpp_hello_world.Rd
anRpackage/src/RcppExports.cpp
anRpackage/src/rcpp_hello_world.cpp
cache/__packages
cache/quickStart_46486566a3ea04c6a2ec7464a7c075be.RData
cache/quickStart_46486566a3ea04c6a2ec7464a7c075be.rdb
cache/quickStart_46486566a3ea04c6a2ec7464a7c075be.rdx
inst/CITATION
inst/extdata/Case1.input.bam
inst/extdata/Case1.m6A.bam
inst/extdata/Case2.input.bam
inst/extdata/Case2.m6A.bam
inst/extdata/Case3.input.bam
inst/extdata/Case3.m6A.bam
inst/extdata/Case4.input.bam
inst/extdata/Case4.m6A.bam
inst/extdata/Case5.input.bam
inst/extdata/Case5.m6A.bam
inst/extdata/Case6.input.bam
inst/extdata/Case6.m6A.bam
inst/extdata/Case7.input.bam
inst/extdata/Case7.m6A.bam
inst/extdata/Case8.input.bam
inst/extdata/Case8.m6A.bam
inst/extdata/Ctl1.input.bam
inst/extdata/Ctl1.m6A.bam
inst/extdata/Ctl2.input.bam
inst/extdata/Ctl2.m6A.bam
inst/extdata/Ctl3.input.bam
inst/extdata/Ctl3.m6A.bam
inst/extdata/Ctl4.input.bam
inst/extdata/Ctl4.m6A.bam
inst/extdata/Ctl5.input.bam
inst/extdata/Ctl5.m6A.bam
inst/extdata/Ctl6.input.bam
inst/extdata/Ctl6.m6A.bam
inst/extdata/Ctl7.input.bam
inst/extdata/Ctl7.m6A.bam
inst/extdata/Ctl8.input.bam
inst/extdata/Ctl8.m6A.bam
inst/extdata/Ctl9.input.bam
inst/extdata/Ctl9.m6A.bam
man/DESeq2.Rd
man/PrepCoveragePlot-MeRIP-method.Rd
man/adjustExprLevel-MeRIP.RADAR-method.Rd
man/countIntronReads.Rd
man/countReads.Rd
man/diffIP.Rd
man/diffIP_parallel.Rd
man/edgeR.Rd
man/extractIP-MeRIP.RADAR-method.Rd
man/extractInput-MeRIP.RADAR-method.Rd
man/filterBins-MeRIP.RADAR-method.Rd
man/geneBins-MeRIP-method.Rd
man/geneExpression.Rd
man/geneExpressionTMP.Rd
man/gtfToGeneModel.Rd
man/normalizeLibrary-MeRIP-method.Rd
man/peakDistribution.Rd
man/plotGeneCov-MeRIP.RADAR-method.Rd
man/plotGeneCoverage.Rd
man/plotGeneCoverageSplit.Rd
man/plotHeatMap.Rd
man/plotPCAfromMatrix.Rd
man/plotTPM.Rd
man/reportResult-MeRIP.RADAR-method.Rd
man/results.Rd
man/select.Rd
src/.gitignore
src/Makevars
src/PoissonGamma.cpp
src/PoissonGamma.cpp_LRT
src/PoissonGamma.o
src/RADAR.so
src/RcppExports.cpp
src/RcppExports.cpp_LRT
src/RcppExports.o
