plotGeneCov-MeRIP.RADAR-method: plotGeneCov

Description Usage Arguments

Description

plotGeneCov

Usage

1
2
3
4
## S4 method for signature 'MeRIP.RADAR'
plotGeneCov(object, geneName,
  libraryType = "opposite", center = mean, ZoomIn = NULL,
  adjustExprLevel = FALSE, split = FALSE)

Arguments

object

The MeRIP. object

geneName

The gene symbol to be ploted.

libraryType

Specify whether the library is the same or opposite strand of the original RNA molecule. Default is "opposite".

center

Specify the method to calculate average coverage of each group. Could be mean or median.

ZoomIn

c(start,end) The coordinate to zoom in at the gene to be ploted.

adjustExprLevel

logical parameter. Specify whether normalize the two group so that they have similar expression level.

split

Logical option. Whether to split plots for each individual (TRUE), or plot each group by group mean/median coverage (FALSE, default).

GTF

The GRanges object containing gtf annotation. Can obtain by rtracklayer::import("file.gtf", format= "gtf").


scottzijiezhang/RADAR documentation built on Feb. 11, 2021, 8:35 p.m.