plotGeneCov-MeRIP.RADAR-method: plotGeneCov
In scottzijiezhang/RADAR: RADAR

plotGeneCov

## S4 method for signature 'MeRIP.RADAR'
plotGeneCov(object, geneName,
  libraryType = "opposite", center = mean, ZoomIn = NULL,
  adjustExprLevel = FALSE, split = FALSE)

`object`	The MeRIP. object
`geneName`	The gene symbol to be ploted.
`libraryType`	Specify whether the library is the same or opposite strand of the original RNA molecule. Default is "opposite".
`center`	Specify the method to calculate average coverage of each group. Could be mean or median.
`ZoomIn`	c(start,end) The coordinate to zoom in at the gene to be ploted.
`adjustExprLevel`	logical parameter. Specify whether normalize the two group so that they have similar expression level.
`split`	Logical option. Whether to split plots for each individual (TRUE), or plot each group by group mean/median coverage (FALSE, default).
`GTF`	The GRanges object containing gtf annotation. Can obtain by rtracklayer::import("file.gtf", format= "gtf").