geneExpressionTMP: getTPM from geneSum

Description Usage Arguments Value

Description

getTPM from geneSum

Usage

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## S4 method for signature 'MeRIP.RADAR'
geneExpressionTMP(object,
  meanFragmentLength = 150, normalize = T)

Arguments

object

The MeRIP.RADAR object

meanFragmentLength

The mean length of RNA fragment (insert of RNA library). Default is 150bp.

normalize

Logical indicating whether normalized TPM or raw TPM should be returned.

Value

A data.frame of gene quantification in Transcript Per Million (reads).


scottzijiezhang/RADAR documentation built on Feb. 11, 2021, 8:35 p.m.