Man pages for scottzijiezhang/RADAR
RADAR
| adjustExprLevel-MeRIP.RADAR-method | adjustExprLevel |
| countIntronReads | countIntronReads |
| countReads | quantify reads in consecutive bins |
| DESeq2 | DESeq2 |
| diffIP | Perform inferential test using Poisson Random effect model in... |
| diffIP_parallel | Perform inferential test using Poisson Random effect model in... |
| edgeR | edgeR |
| extractInput-MeRIP.RADAR-method | extractINPUT |
| extractIP-MeRIP.RADAR-method | extractIP |
| filterBins-MeRIP.RADAR-method | filterBins |
| geneBins-MeRIP-method | extract geneBins |
| geneExpression | extractor for RNAseq data |
| geneExpressionTMP | getTPM from geneSum |
| gtfToGeneModel | gtfToGeneModel |
| normalizeLibrary-MeRIP-method | normalizeLibrary |
| peakDistribution | plot distribution of peaks on gene annotation |
| plotGeneCoverage | plotGeneCoverage |
| plotGeneCoverageSplit | plotGeneCoverageSplit |
| plotGeneCov-MeRIP.RADAR-method | plotGeneCov |
| plotHeatMap | plotHeatMap |
| plotPCAfromMatrix | plotPCAfromMatrix |
| plotTPM | plotTPM |
| PrepCoveragePlot-MeRIP-method | Prepare coverage plot |
| reportResult-MeRIP.RADAR-method | reportResult |
| results | export results |
| select | subset MeRIPdata |
