protein: A protein interaction network (undirected)

In sctyner/geomnet: Network Visualization in the 'ggplot2' Framework

Description

A list of two datasets, vertices and edges, containing data on the complete protein-protein interaction network in the yeast species S. cerevisiae (https://snap.stanford.edu/data/S-cerevisiae.html). The variables are as follows:

Usage

protein

Format

A list of two data frames:

• the edges data set consists of two variables of length 4480:

  • from, to: Integer variables describing interactions between proteins, which are identified integers

• the vertices vector consists of the corresponding IDs of 2113 proteins in the edges data set

References

H. Jeong, S. Mason, A.L. Barabasi and Z.N. Oltvai, Centrality and lethality of protein networks Nature 411, 41 (2001)

sctyner/geomnet documentation built on Dec. 1, 2020, 5:30 p.m.