s.image: 2-D scatter plot with loess estimation of an additional...

In sdray/adegraphics: An S4 Lattice-Based Package for the Representation of Multivariate Data

2-D scatter plot with loess estimation of an additional numeric score (levelplot)

Description

This function represents a two dimensional scatter plot with a continuous convex colored surface and/or contour lines representing a third variable.

Usage

s.image(dfxy, z, xax = 1, yax = 2, span = 0.5, gridsize = c(80L, 80L), 
  contour = TRUE, region = TRUE, outsideLimits = NULL, breaks = NULL,
  nclass = 8, col = NULL, facets = NULL, 
  plot = TRUE, storeData = TRUE, add = FALSE, pos = -1, ...)

Arguments

dfxy	a data frame used to produce the plot
z	a vector (or a matrix) of values on the dfxy rows
xax	an integer (or a vector) indicating which column(s) of dfxy is(are) plotted on the x-axis
yax	an integer (or a vector) indicating which column(s) of dfxy is(are) plotted on the y-axis
span	a value to control the degree of smoothing
gridsize	a 1 or 2-length vector indicating the cell numbers (horizontally and vertically) of the grid for the colored surface
contour	a logical to draw contour lines
region	a logical to fill inter-contour regions
breaks	a vector of values to split z. If NULL, pretty(z, nclass) is used.
nclass	an integer for the number of desired intervals, ignored if breaks is not missing.
outsideLimits	specific limits for the surface as a set of polygons. It must be an SpatialPolygons object. Hole are authorized.
col	a color or a colors vector used for the colored cells
facets	a factor splitting the rows of dfxy so that subsets of the data are represented on different sub-graphics
plot	a logical indicating if the graphics is displayed
storeData	a logical indicating if the data should be stored in the returned object. If FALSE, only the names of the data arguments are stored
add	a logical. If TRUE, the graphic is superposed to the graphics already plotted in the current device
pos	an integer indicating the position of the environment where the data are stored, relative to the environment where the function is called. Useful only if storeData is FALSE
...	additional graphical parameters (see adegpar and trellis.par.get)

Value

An object of class ADEg (subclass S2.image) or ADEgS (if add is TRUE and/or if facets or multidimensional z or vectors for xax/yax are used).
The result is displayed if plot is TRUE.

Author(s)

Alice Julien-Laferriere, Aurelie Siberchicot [e-mail] and Stephane Dray

See Also

S2.image ADEg.S2

Examples

df1 <- data.frame(expand.grid(-3:3, -3:3))
names(df1) <- c("x", "y")
z1 <- (1 / sqrt(2)) * exp(-(df1$x ^ 2 + df1$y ^ 2) / 2)
g1 <- s.image(df1, z1)

# add a continuous color bar as legend
# update(g1, plegend.drawColorKey = TRUE)

g2 <- s.image(df1, z1, gridsize = 50)

g3 <- s.image(df1, z1, gridsize = 100)
## g4 <- s.image(df1, z1, gridsize = 1000, plot = FALSE)

## Not run: 
  if(require(splancs, quietly = TRUE) & require(sp, quietly = TRUE)) {
    Sr1 <- Polygon(cbind(c(0, 1, 2, 1, 2, 0, -2, -1, -2, -1, 0), 
      c(2.5, 1.5, 2, 0, -2, -1, -2, 0, 2, 1.5, 2.5)))
    Sr2 <- Polygon(cbind(c(-0.5, 0.5, 0.5, -0.5, -0.5), c(0, 0, 1 ,1, 0)), hole = TRUE)
    Srs2 <- Polygons(list(Sr1, Sr2), ID = "star and hole")
    SPp <- SpatialPolygons(list(Srs2))
    df2 <- cbind(c(rnorm(2000, 1, 0.25), rnorm(3000, -1, 1.5)), c(rnorm(2000, 1, 0.5), 
      rnorm(3000, -1, 3)))
    z2 <- c(rnorm(2000, 12, 1), rnorm(3000, 1, 2))
    g5 <- s.image(df2, z2, outsideLimits = SPp, grid = 200, xlim = c(-2.5, 2.5), 
      ylim = c(-2, 3), ppalette.quanti = colorRampPalette(c(grey(0.1), grey(0.9))))
  
    data(t3012, package = "ade4")  
    g6 <- s.image(t3012$xy, ade4::scalewt(t3012$temp), porigin.include = FALSE)
    g7 <- s.image(t3012$xy, ade4::scalewt(t3012$temp), outsideLimits = t3012$Spatial, 
      Sp = t3012$Spatial)
  }

## End(Not run)

sdray/adegraphics documentation built on July 26, 2024, 1:25 a.m.