Files in seabbs/DirectEffBCGPolicyChange
Estimating the direct effect of the 2005 UK BCG vaccination policy change.
.Rbuildignore
.Rprofile
.gitignore
DESCRIPTION
DirectEffBCGPolicyChange.Rproj
Dockerfile
LICENSE
Makefile
NAMESPACE
R/Base_Model.R
R/ModelConstruct.R
R/OR_inf_rep.R
R/UnloadUserDLLs.R
R/add_looic_com_to_no_policy_change.R
R/best_fit_results_table.R
R/best_model_fit.R
R/capture_stan_DLLs.R
R/case_rate.R
R/clear_user_DLL.R
R/epi_conf.R
R/extract_inf_ef.R
R/fit_stan_models.R
R/format_est_sd.R
R/format_model_summaries.R
R/justify_char_numeric.R
R/model_comparison.R
R/pretty_round_inf.R
R/sim_cohort_vac_cam.R
R/store_warnings.R
R/summarise_model_fit.R
R/utils-pipe.R
README.Rmd
README.md
_pkgdown.yml
binder/Dockerfile
data-raw/.Rprofile
data-raw/Makefile
data-raw/StudyCasesSum.csv
data-raw/age_grouped_incidence.csv
data-raw/cases_demo_incidence.csv
data-raw/condensed_age_group_incidence.csv
data-raw/create_package.R
data-raw/extract_not_sum_data.R
data-raw/get_incidence_rates.R
data-raw/imputation_evaluation.rds
data-raw/incidence.csv
data/.Rapp.history
data/StudyCasesSum.rda
data/age_grouped_incidence.rda
data/cases_demo_incidence.rda
data/condensed_age_group_incidence.rda
data/incidence.rda
docker-compose.yml
docs/LICENSE-text.html
docs/articles/formated-results/figure-1.png
docs/articles/formated-results/figure-2.png
docs/articles/index.html
docs/articles/paper.html
docs/articles/paper_files/figure-html/cohort-summary-plot-1.png
docs/articles/paper_files/figure-html/inc-rate-summary-plot-1.png
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Base_Model.html
docs/reference/ModelConstruct.html
docs/reference/OR_inf_rep.html
docs/reference/UnloadUserDLLs.html
docs/reference/add_looic_com_to_no_policy_change.html
docs/reference/best_fit_results_table.html
docs/reference/best_model_fit.html
docs/reference/capture_stan_DLLs.html
docs/reference/case_rate.html
docs/reference/clear_user_DLL.html
docs/reference/epi_conf.html
docs/reference/extract_inc_ef.html
docs/reference/fit_stan_models.html
docs/reference/format_est_sd.html
docs/reference/format_model_summaries.html
docs/reference/index.html
docs/reference/justify_char_numeric.html
docs/reference/model_comparison.html
docs/reference/pass-pipe.html
docs/reference/pipe.html
docs/reference/pretty_round_inf.html
docs/reference/sim_cohort_vac_cam.html
docs/reference/store_warnings.html
docs/reference/summarise_model_fit.html
docs/sitemap.xml
man/Base_Model.Rd
man/ModelConstruct.Rd
man/OR_inf_rep.Rd
man/UnloadUserDLLs.Rd
man/add_looic_com_to_no_policy_change.Rd
man/best_fit_results_table.Rd
man/best_model_fit.Rd
man/capture_stan_DLLs.Rd
man/case_rate.Rd
man/clear_user_DLL.Rd
man/epi_conf.Rd
man/extract_inc_ef.Rd
man/fit_stan_models.Rd
man/format_est_sd.Rd
man/format_model_summaries.Rd
man/justify_char_numeric.Rd
man/model_comparison.Rd
man/pass-pipe.Rd
man/pipe.Rd
man/pretty_round_inf.Rd
man/sim_cohort_vac_cam.Rd
man/store_warnings.Rd
man/summarise_model_fit.Rd
peer-review/assets/.DS_Store
peer-review/assets/figure_1.tiff
peer-review/cover-letter.Rmd
peer-review/cover-letter.docx
peer-review/euro-paper-post-review.docx
peer-review/euro-paper-review-markup.docx
peer-review/euro-paper.docx
peer-review/review-response.Rmd
peer-review/review-response.docx
peer-review/si.docx
peer-review/title-page.docx
tests/.Rprofile
tests/testthat.R
vignettes/.Rprofile
vignettes/Makefile
vignettes/drafts/formated_drafts/19-02-06-paper.docx
vignettes/drafts/formated_drafts/19-02-06-si.docx
vignettes/drafts/paper/paper.docx
vignettes/drafts/paper/paper.html
vignettes/formated-results/best-targeted-nonukborn.rds
vignettes/formated-results/best-targeted-ukborn.rds
vignettes/formated-results/best-universal-nonukborn.rds
vignettes/formated-results/best-universal-ukborn.rds
vignettes/formated-results/cohorts.rds
vignettes/formated-results/estimated-impact.rds
vignettes/formated-results/figure-1.pdf
vignettes/formated-results/figure-1.png
vignettes/formated-results/figure-2.pdf
vignettes/formated-results/figure-2.png
vignettes/formated-results/imputation-evaluation.rds
vignettes/formated-results/model-spec.rds
vignettes/formated-results/nonukborn-incidence-estimates.rds
vignettes/formated-results/summary-targeted-nonukborn.rds
vignettes/formated-results/summary-targeted-ukborn.rds
vignettes/formated-results/summary-universal-nonukborn.rds
vignettes/formated-results/summary-universal-ukborn.rds
vignettes/formated-results/targeted-main-results.rds
vignettes/formated-results/targeted-nonukborn-results-summary.rds
vignettes/formated-results/targeted-ukborn-results-summary.rds
vignettes/formated-results/ukborn-incidence-estimates.rds
vignettes/formated-results/universal-main-results.rds
vignettes/formated-results/universal-nonukborn-results-summary.rds
vignettes/formated-results/universal-ukborn-results-summary.rds
vignettes/paper.Rmd
vignettes/resources/bmj.csl
vignettes/resources/header.tex
vignettes/resources/international-journal-epidemiology.csl
vignettes/resources/library.bib
vignettes/resources/style.docx
vignettes/resources/vancouver.csl
vignettes/results/BestTargetedNonUKBorn.rds
vignettes/results/BestTargetedUKBorn.rds
vignettes/results/BestUniversalNonUKBorn.rds
vignettes/results/BestUniversalUKBorn.rds
vignettes/results/NBModelResults1.rds
vignettes/results/NBModelResults2.rds
vignettes/results/NBModelResults3.rds
vignettes/results/NBModelResults4.rds
vignettes/results/PoissonModelResults1.rds
vignettes/results/PoissonModelResults2.rds
vignettes/results/PoissonModelResults3.rds
vignettes/results/PoissonModelResults4.rds
vignettes/results/model_specifcation.csv
vignettes/scripts/descriptive_data_sum.R
vignettes/scripts/exploratory_plots.R
vignettes/scripts/packages.R
vignettes/scripts/restrict_cohorts_study_crit.R
