tests/testthat/_snaps/preprocess.md

In seabbs/epict: Flexible Cycle Threshold Modelling

epict_filter_ids() works

Code
  epict_filter_ids(obs)
Output
     censored id t uncensored_tests days_with_uncensored
  1:     TRUE  1 0                2                    2
  2:    FALSE  1 0                2                    2
  3:    FALSE  1 1                2                    2

Code
  epict_filter_ids(obs, invert = TRUE)
Output
     censored id t uncensored_tests days_with_uncensored
  1:    FALSE  2 1                1                    1
  2:     TRUE  3 1                1                    1
  3:    FALSE  3 2                1                    1

Code
  epict_filter_ids(obs, min_uncensored_tests = 3, min_days_with_uncensored = 1)
Output
     censored id t uncensored_tests days_with_uncensored
  1:    FALSE  4 1                3                    1
  2:    FALSE  4 1                3                    1
  3:    FALSE  4 1                3                    1

epict_flag_spurious_obs() works

Code
  epict_flag_spurious_obs(obs, flag = FALSE)
Message <simpleMessage>
  Spurious tests have been dropped
Output
     t_rel_uncensored onset_t_rel_uncensored
  1:                0                      0
  2:                2                     NA
  3:               10                      2
  4:               60                     NA
  5:               30                      5

epict_make_time_rel_to_first_uncensored() works

Code
  epict_make_time_rel_to_first_uncensored(obs)
Output
     id t onset_t censored t_first_uncensored t_rel_uncensored
  1:  1 2       2     TRUE                  3               -1
  2:  1 3       2    FALSE                  3                0
  3:  1 4       2    FALSE                  3                1
  4:  2 1       4     TRUE                  1                0
  5:  2 1       4    FALSE                  1                0
  6:  2 2       4    FALSE                  1                1
  7:  2 8       4    FALSE                  1                7
     onset_t_rel_uncensored
  1:                     -1
  2:                     -1
  3:                     -1
  4:                      3
  5:                      3
  6:                      3
  7:                      3

seabbs/epict documentation built on July 3, 2023, 6:42 a.m.