Description Usage Arguments Value
View source: R/calculate_incidence_ets_lfs_ons.R
This function returns multiple incidence rate datesets, with varying age groupings. This enables more rapid interrogation of the data.
1 2 3 4 5 6 7 8 9 | calculate_incidence_ets_lfs_ons(data_path = "~/data/tb_data/tbinenglanddataclean",
ets_name = "clean_ets_2016.rds",
demo_name = "E_ons_lfs_2000_2016.rds", return = TRUE, save = TRUE,
incidence_name = "incidence",
grouped_incidence_name = "age_grouped_incidence",
condensed_grouped_incidence_name = "condensed_age_group_incidence",
cases_demo_incidence_name = "cases_demo_incidence",
save_path = "~/data/tb_data/tbinenglanddataclean",
save_format = "rds", verbose = TRUE, theme_set = theme_minimal)
|
data_path |
A charater string containing the file path to the demographic data. |
ets_name |
A character string of the name for the cleaned ETS data. |
demo_name |
A character string of the name for the cleanded demographic ONS and LFS data. |
return |
Logical, defaults to |
save |
Logical, defaults to |
incidence_name |
A character string indicating the name to save the incidence data under. |
grouped_incidence_name |
A character string indicating the name to save the age grouped incidence data under. |
condensed_grouped_incidence_name |
A character string indicating the name to save the condensed age grouped data under. |
cases_demo_incidence_name |
A character string indicating the name to save the cases, and demographic data under. |
save_path |
The filepath for the data to be saved in |
save_format |
A character vector specifying the format/formats to save the data into, defaults to rds. Currently
csv is also supported. See |
verbose |
A logical indicating whether summary information should be provided. |
theme_set |
The ggplot theme to apply to the summary graphs, defaults to theme_minimal |
A list of dataframes containing incidence data in an increasingly condensed format.
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