Man pages for sean-rohan/trawllight
Derive apparent optical properties from trawl-mounted light sensors
| assign_orientation | Assign orientation |
| calculate_attenuation | Diffuse attenuation coefficient of downwelling irradiance |
| calculate_od | Calculate optical depth |
| convert_light | Convert archival tag light to PFD |
| csv_rbind | Open and bind rows of csv to data frame |
| energy_to_quanta | Convert radiometric energy to photon flux density |
| estimate_surface | Estimate missing light measurement from reference depth bin |
| filter_stepwise | Bin and filter light measurements |
| find_optical_depth | Depth of optical depth |
| geometric.mean | Geometric mean |
| illumR | Vectorized version of Janiczek and DeYoung (1987) for R |
| light_proportion | Calculate relative light level and linear attenuation... |
| loess.as2 | Local polynomial regression with automatic span selection and... |
| make_aop_ncdf | Make netCDF files |
| mk9_cast_times | Get cast times |
| mk9_convert_wcdap_archive | Convert WCDAP archive csv to trawllight csv format |
| mk9_convert_wctab | Convert WC Instrument Helper file to trawllight csv format |
| mk9_extinction | Write time-corrected data to csv |
| mk9_find_surface_offset | Find and apply time offset to deck tag data |
| mk9_setup_dir | Copy MK9 data and setup directory |
| mk9_time_offset | Estimate offset between MK9 and MBT times |
| quanta_to_energy | Photon flux density to radiometric energy |
| radtran | RADTRAN Solar Irradiance Model with delta-Eddington cloud... |
| radtran_solar_zenith | Calculate solar zenith angle |
| spctral2 | SPCTRAL2 Solar Irradiance Model |
| tag_residuals_direct | Direct method for detecting tag obstruction |
| tag_residuals_indirect | Indirect method for detecting tag obstruction |
| threshold_select | 'threshold_select' uses the first derivative of a kernel... |
| time_adjustments | Correct tag time in cases where offsets were incorrect |
| tlu_calc_summary | Write AOPs |
| tlu_get_bottom | Retrieve bottom light data |
| tlu_get_casts | Wrapper function to retrieve cast data and aggregate |
| tlu_get_surface | Wrapper function to retrieve cast data and aggregate |
| tlu_run_trawllight | Wrapper function to run trawllight |
| tlu_setup_dir | Copy MK9 data and setup directory |
