plot_sim_ts: Plot various time series from a simulation run

In seananderson/metafolio: Metapopulation Simulations for Conserving Salmon Through Portfolio Optimization

Plot various time series from a simulation run

Description

This function lets you quickly visualize the time series of output from a simulation run.

Usage

plot_sim_ts(
  x,
  pal = rev(gg_color_hue(x$n_pop)),
  years_to_show = 30,
  burn = 1:50,
  shade_years = NULL,
  adj = 0.02,
  add_units = FALSE,
  yticks = rep(list(NA), 10),
  oma = c(4, 4.5, 1, 1)
)

Arguments

x	A list output object from a simulation run of link{meta_sim}.
pal	A colour palette for the lines. One colour per line (each line is a population time series).
years_to_show	How many years to plot after the burn in period.
burn	The number of years to discard as burn in at the beginning of the time series.
shade_years	Shade some years? Give a vector. Shading will be applied from the minimum to maximum value. Can be used to show burn in period.
adj	adj parameter to pass to mtext for panel labels
add_units	Should the units be added to the y axis?
yticks	Position of ticks on the Y axis.
oma	oma vector to pass to par for outer margin space.

Value

A plot

Examples

arma_env_params <- list(mean_value = 16, ar = 0.1, sigma_env = 2, ma = 0)
base1 <- meta_sim(n_pop = 10, env_params = arma_env_params, env_type =
  "arma", assess_freq = 5, decrease_b = 10)
plot_sim_ts(base1, years_to_show = 70, burn = 1:30)

seananderson/metafolio documentation built on Feb. 13, 2024, 5:47 a.m.