Man pages for seananderson/pbs-synopsis
Data Extraction and Plotting for DFO PBS Groundfish Stocks

assign_areasAssign areas
bind_samplesJoin survey and commercial samples
fit_cpue_index_glmmtmbFit CPUE with glmmTMB
fit_inlaFit a spatial model with INLA
fit_length_weightFit a length-weight model
fit_vbFit a von Bertalanffy growth model
get_cpue_historicalGet all fishing catch and effort to calculate historical...
get_dataGet PBS data
gfplotgfplot package
hbll_gridA 2km x 2km grid for the HBLL survey
hbll_n_gridA 2km x 2km grid for the HBLL North survey
hbll_s_gridA 2km x 2km grid for the HBLL South survey
inject_filtergfplot utilities
pbs_areasPBS groundfish areas
pbs_speciesPBS groundfish species
pipePipe operator
plot_age_precisionPlot ageing precision data
plot_agesPlot age frequency data
plot_catchPlot catch data over time
plot_cpue_spatialPlot a map of commercial CPUE
plot_growthPlot von Bertalanffy or length-weight fits
plot_lengthsPlot length frequency data
plot_mat_ogiveFit and plot maturity ogives
plot_maturity_monthsPlot maturity frequency by month
plot_predictor_bubblesMake predictor level bubble plots
plot_sample_availPlot sample availability
plot_survey_indexPlot survey relative biomass mass index
plot_survey_setsPlot the output from a geostatistical model of survey data
pop_samplesExample Pacific Ocean Perch biological samples from QCS.
pop_survExample Pacific Ocean Perch survey data from QCS in 2015
qres_tweedieQuantile residuals for a Tweedie GLMM fit with glmmTMB
run_sqlRun SQL
survey_boundariesSurvey boundaries
survey-spatial-modellingSpatial modeling of survey data
synoptic_gridSynoptic grid
theme_pbsA ggplot2 theme
tidy_age_precisionTidy PBS ageing precision data
tidy_compsTidy age or length composition data for plotting or modelling
tidy_cpue_historicalTidy historical CPUE data
tidy_cpue_indexTidy commercial PBS CPUE data
tidy_sample_availTidy PBS samples data for 'plot_sample_avail()'
tidy_survey_setsTidy the survey set data for use in modeling
weight_compsAge and length frequency weighting
seananderson/pbs-synopsis documentation built on July 12, 2019, 2:47 a.m.