API for seananderson/pbs-synopsis
Data Extraction and Plotting for DFO PBS Groundfish Stocks

Global functions
%>% Man page
all_species_codes Source code
ann Source code
ann_lw Source code
ann_vb Source code
assign_areas Man page Source code
bin_lengths Source code
bind_samples Man page Source code
boot_iphc Man page Source code
cache_pbs_data Man page Source code
cache_pbs_data_iphc Man page Source code
calc_iphc_full_res Man page Source code
calc_iphc_ser_AB Man page Source code
calc_iphc_ser_all Man page Source code
check_iphc_spp_name Man page Source code
clean_localities Source code
codes2common Source code
collapse_filters Source code
common2codes Source code
compare_iphc_ser_A_D Man page Source code
compare_iphc_ser_B_C Man page Source code
compute_hexagon_xy Source code
countData1995 Man page
countData1995rs Man page
countData2013 Man page
data1996to2002 Man page
db_connection Source code
delta_method Source code
enact_privacy_rule Source code
extract_maturity_perc Source code
f Man page Source code
factor_bin_clean Source code
factor_clean Source code
fct_to_tmb_num Source code
first_cap Source code
firstup Source code
fit_cpue_index Man page Source code
fit_cpue_index_glmmtmb Man page Source code
fit_cpue_index_tweedie Man page Source code
fit_glmmfields Source code
fit_inla Man page Source code
fit_length_weight Man page Source code
fit_mat_ogive Man page Source code
fit_survey_sets Man page Source code
fit_vb Man page Source code
force_three_letter_species_code Source code
format_iphc_longest Man page Source code
get_age_methods Man page Source code
get_age_precision Man page Source code
get_all_iphc_set_counts Man page Source code
get_catch Man page Source code
get_commercial_samples Man page Source code
get_cpue_historic Man page Source code
get_cpue_historical Man page Source code
get_cpue_index Man page Source code
get_cpue_spatial Man page Source code
get_cpue_spatial_ll Man page Source code
get_data Man page
get_early_iphc Man page
get_fishery_ids Man page Source code
get_gear_types Man page Source code
get_hake_catch Man page Source code
get_iphc_1995 Man page Source code
get_iphc_1996to2002 Man page Source code
get_iphc_2013 Man page Source code
get_iphc_hooks Man page Source code
get_iphc_sets Man page Source code
get_iphc_sets_info Man page Source code
get_iphc_skates_info Man page Source code
get_iphc_spp_name Man page Source code
get_major_areas Man page Source code
get_management Man page Source code
get_management_areas Man page Source code
get_most_common_level Man page Source code
get_other_surveys Man page Source code
get_response Source code
get_response_lme4 Source code
get_sample_trips Source code
get_sara_dat Man page Source code
get_sensor_attributes Man page Source code
get_sensor_data_ll_ctd Man page Source code
get_sensor_data_ll_td Man page Source code
get_sensor_data_trawl Man page Source code
get_species Man page Source code
get_species_groups Man page Source code
get_ssids Man page Source code
get_strata_areas Source code
get_survey_ids Source code
get_survey_index Man page Source code
get_survey_samples Man page Source code
get_survey_sets Man page Source code
gfplot Man page
gfplot-package Man page
hbll_grid Man page
hbll_n_grid Man page
hbll_s_grid Man page
hex_coords Source code
initf Source code
inject_filter Source code
interp_survey_bathymetry Source code
iphc-spp-names.csv Man page
iphc_get_calc_plot Man page Source code
is_dfo Source code
is_even Source code
is_windows Source code
ll2utm Source code
load_bath Source code
load_coastline Source code
load_isobath Source code
load_tmb Source code
load_tmb_1re_cpue Source code
load_tmb_2re_cpue Source code
load_tmb_cpue Source code
logit_perc Source code
make_glmerControl Source code
make_pred_mm Source code
make_prediction_grid Source code
mround Source code
ndecimals Source code
parse_formula Source code
pbs_areas Man page
pbs_species Man page
plot_age_precision Man page Source code
plot_ages Man page Source code
plot_catch Man page Source code
plot_cpue_index Man page Source code
plot_cpue_index_coefs Man page Source code
plot_cpue_index_jk Man page Source code
plot_cpue_predictions Source code
plot_cpue_spatial Man page Source code
plot_dfo_localities Source code
plot_growth Man page Source code
plot_iphc_index Man page Source code
plot_length_weight Man page Source code
plot_lengths Man page Source code
plot_mat_ogive Man page Source code
plot_maturity_months Man page Source code
plot_predictor_bubbles Man page Source code
plot_qres_histogram Man page Source code
plot_qres_qq Man page Source code
plot_sample_avail Man page Source code
plot_survey_index Man page Source code
plot_survey_sets Man page Source code
plot_vb Man page Source code
pop_samples Man page
pop_surv Man page
predict_cpue_index Man page Source code
predict_cpue_index_tweedie Man page Source code
predict_inla Source code
qres_binomial Man page Source code
qres_gamma Man page Source code
qres_gaussian Man page Source code
qres_tweedie Man page Source code
read_sql Source code
rotate_coords Source code
rotate_df Source code
round_any Source code
round_down_even Source code
round_nice Source code
round_up_even Source code
run_sql Man page Source code
scale_survey_predictors Source code
sd2cv Source code
setData1995 Man page
setData1995rs Man page
setData2013 Man page
sim_cpue Man page Source code
survey_boundaries Man page
theme_pbs Man page Source code
tidy_age_precision Man page Source code
tidy_ages_raw Man page Source code
tidy_ages_weighted Man page Source code
tidy_catch Man page Source code
tidy_comps Man page Source code
tidy_comps_commercial Man page Source code
tidy_comps_survey Man page Source code
tidy_cpue_historic Man page Source code
tidy_cpue_historical Man page Source code
tidy_cpue_index Man page Source code
tidy_cpue_index_coefs Man page Source code
tidy_cpue_index_coefs_tweedie Man page Source code
tidy_iphc_survey Man page Source code
tidy_lengths_raw Man page Source code
tidy_lengths_weighted Man page Source code
tidy_maturity_months Man page Source code
tidy_sample_avail Man page Source code
tidy_survey_index Man page Source code
tidy_survey_sets Man page Source code
utm2ll Source code
weight_comps Man page Source code
weight_comps_base Source code
seananderson/pbs-synopsis documentation built on March 8, 2019, 2:37 p.m.