API for seandavi/GEOquery
Get data from NCBI Gene Expression Omnibus (GEO)
| Global functions | |
|---|---|
| .genericGEOTableParser | Source code |
| .onLoad | Source code |
| .parseGPLTxt | Source code |
| .parseGPLWithLimits | Source code |
| .parseGSMTxt | Source code |
| .parseGSMWithLimits | Source code |
| .read_lines | Source code |
| Accession | Man page |
| Accession,GEOData-method | Man page |
| Accession,GEODataTable-method | Man page |
| Columns | Man page |
| Columns,GEOData-method | Man page |
| Columns,GEODataTable-method | Man page |
| GDS-class | Man page |
| GDS2MA | Man page |
| GDS2eSet | Man page |
| GEOData-accessors | Man page |
| GEOData-class | Man page |
| GEODataTable-class | Man page |
| GPL | Man page |
| GPL,GDS-method | Man page |
| GPL-class | Man page |
| GPLList | Man page |
| GPLList,GSE-method | Man page |
| GSE-class | Man page |
| GSM-class | Man page |
| GSMList | Man page |
| GSMList,GSE-method | Man page |
| Meta | Man page |
| Meta,GEOData-method | Man page |
| Meta,GEODataTable-method | Man page |
| Meta,GSE-method | Man page |
| Table | Man page |
| Table,GEOData-method | Man page |
| Table,GEODataTable-method | Man page |
| browseGEOAccession | Man page Source code |
| browseWebsiteRNASeqSearch | Man page Source code |
| chopColumns | Source code |
| coercion | Man page |
| dataTable | Man page |
| dataTable,GEOData-method | Man page |
| dataTable,GEODataTable-method | Man page |
| downloadFile | Source code |
| extractFilenameFromDownloadURL | Man page Source code |
| fastTabRead | Source code |
| fileOpen | Source code |
| filegrep | Source code |
| findFirstEntity | Source code |
| getAndParseGSEMatrices | Source code |
| getDirListing | Man page Source code |
| getGEO | Man page Source code |
| getGEORaw | Source code |
| getGEOSuppFiles | Man page Source code |
| getGEOfile | Man page Source code |
| getGSEDataTables | Man page Source code |
| getGSEDownloadPageURLs | Man page Source code |
| getRNAQuantAnnotationURL | Man page Source code |
| getRNAQuantRawCountsURL | Man page Source code |
| getRNASeqData | Man page Source code |
| getRNASeqQuantGenomeInfo | Man page Source code |
| getRNASeqQuantResults | Man page Source code |
| hasRNASeqQuantifications | Man page Source code |
| parseGDS | Man page Source code |
| parseGDSSubsets | Source code |
| parseGEO | Man page Source code |
| parseGPL | Man page Source code |
| parseGSE | Man page Source code |
| parseGSEMatrix | Man page Source code |
| parseGSM | Man page Source code |
| parseGeoColumns | Source code |
| parseGeoMeta | Source code |
| parse_name_value_pairs | Source code |
| preprocess_records | Source code |
| printHead | Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code Source code |
| readRNAQuantAnnotation | Man page Source code |
| readRNAQuantRawCounts | Man page Source code |
| searchFieldsGEO | Man page Source code |
| searchGEO | Man page Source code |
| show,GEOData-method | Man page |
| show,GEODataTable-method | Man page |
| splitOnFirst | Source code |
| str_split | Source code |
| txtGrab | Source code |
| urlExtractRNASeqQuantGenomeInfo | Man page Source code |
| urlForAccession | Man page Source code |
