Files in seandavi/GEOquery
Get data from NCBI Gene Expression Omnibus (GEO)
.Rbuildignore
.github/.gitignore
.github/ISSUE_TEMPLATE/bug_report.md
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/pr-commands.yaml
.gitignore
.lintr
CODE_OF_CONDUCT.md
DESCRIPTION
Dockerfile
GEOquery.Rproj
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/GDS2MA.R
R/GEOquery-package.R
R/browseGEOAccession.R
R/classes.R
R/fileOpen.R
R/getGEO.R
R/getGEOSuppFiles.R
R/getGEOfile.R
R/getGSEDataTables.R
R/parseGEO.R
R/rnaseq.R
R/searchGEO.R
R/zzz.R
README.md
_pkgdown.yml
inst/CITATION
inst/extdata/GDS507.soft.gz
inst/extdata/GPL97.annot.gz
inst/extdata/GPLbroken.soft.gz
inst/extdata/GSE781_family.soft.gz
inst/extdata/GSM11805.txt.gz
inst/scripts/buildGEODocsumJson.R
inst/scripts/geometa.R
man/GDS-class.Rd
man/GEOData-accessors.Rd
man/GEOData-class.Rd
man/GEODataTable-class.Rd
man/GPL-class.Rd
man/GSE-class.Rd
man/GSM-class.Rd
man/browseGEOAccession.Rd
man/browseWebsiteRNASeqSearch.Rd
man/coercion.Rd
man/extractFilenameFromDownloadURL.Rd
man/getDirListing.Rd
man/getGEO.Rd
man/getGEOSuppFiles.Rd
man/getGEOfile.Rd
man/getGSEDataTables.Rd
man/getGSEDownloadPageURLs.Rd
man/getRNAQuantAnnotationURL.Rd
man/getRNAQuantRawCountsURL.Rd
man/getRNASeqData.Rd
man/getRNASeqQuantGenomeInfo.Rd
man/getRNASeqQuantResults.Rd
man/hasRNASeqQuantifications.Rd
man/parseGEO.Rd
man/parseGSEMatrix.Rd
man/readRNAQuantAnnotation.Rd
man/readRNAQuantRawCounts.Rd
man/searchFieldsGEO.Rd
man/searchGEO.Rd
man/urlExtractRNASeqQuantGenomeInfo.Rd
man/urlForAccession.Rd
tests/testthat.R
tests/testthat/test_GDS.R
tests/testthat/test_GEO_conversions.R
tests/testthat/test_GPL.R
tests/testthat/test_GSE.R
tests/testthat/test_GSM.R
tests/testthat/test_fetch_GPL_false.R
tests/testthat/test_geo_browse.R
tests/testthat/test_geo_rnaseq.R
tests/testthat/test_search.R
tests/testthat/test_supp_files.R
vignettes/.gitignore
vignettes/GEOquery.Rmd
