Man pages for seandavi/RefineBio
The bridge between refine.bio and Bioconductor
| dataset_page_browser | Open a webpage for the given dataset |
| dataset_sharing_link | Get a sharing link for the given dataset |
| datastore_datasets | List cached datasets' |
| datastore_example_path | An example datastore |
| datastore_get_path | Local datastore path settings |
| datastore_set_path | Set the path to the refine.bio datastore |
| dot-process_json_result | process the httr json response |
| dot-rb_get_email_address | internal function to get the email address for the current... |
| dot-refinebio_base | refinebio url |
| download_dataset | Download an available dataset from refine.bio |
| extract_dataset | Extract a downloaded dataset zipfile |
| extract_local_dataset | load a list of 'SummarizedExperiment's from an extracted... |
| get_absolute_path | Get absolute path to a file or directory |
| get_compendia_catalog | All available compendia in refine.bio |
| get_experiment_catalog | Complete list of all experiments in refine.bio |
| get_refinebio | Get one or more experiments (GSE, SRP, etc) from RefineBio |
| load_dataset | Load a dataset from a refinebio download |
| process_and_load_dataset | Process and load a dataset |
| rb_dataset_update_state | Get the state of a dataset |
| rb_email_address | get the email address for the current session |
| rb_get_token | Create or get an active API token for use in downloading from... |
| rb_set_email_address | set the email address for the current session |
| wait_for_dataset | Wait for a dataset to become available |
