AgilentSet-class: Class "AgilentSet"

In seandavi/Rpressa: A collection of useful code for bioinformatics

Description

Derived from an eSet, adds two data.frames to the class for storing feparams and festats from the Agilent output

Objects from the Class

Objects can be created by calls of the form new("AgilentSet", feparams, festats, ...).

Slots

feparams:

Object of class "data.frame" containing the output of the Agilent feature extraction parameters, one row per sample.

festats:

Object of class "data.frame" containing the output of the Agilent feature extraction stats, one row per sample.

assayData:

Object of class "AssayData" ~~

phenoData:

Object of class "AnnotatedDataFrame" ~~

featureData:

Object of class "AnnotatedDataFrame" ~~

experimentData:

Object of class "MIAME" ~~

annotation:

Object of class "character" ~~

.__classVersion__:

Object of class "Versions" ~~

Extends

Class "ExpressionSet", directly. Class "eSet", by class "ExpressionSet", distance 2. Class "VersionedBiobase", by class "ExpressionSet", distance 3. Class "Versioned", by class "ExpressionSet", distance 4.

Methods

feparams

signature(.Object = "AgilentSet"): accessor for the feparams slot

festats

signature(.Object = "AgilentSet"): accessor for the festats slot

initialize

signature(.Object = "AgilentSet"): ...

\item

assignature(from=AgilentSet,to="cghRaw"): Coerce an AgilentSet to CGHbase::cghRaw.

Author(s)

Sean Davis <[e-mail]>

See Also

readAgilent and eSet

Examples

showClass("AgilentSet")

seandavi/Rpressa documentation built on May 29, 2019, 4:33 p.m.