Man pages for seandavi/sars2pack
COVID-19 data resources and analysis tools
| acaps_government_measures_data | ACAPS government measures catalogs worldwide COVID-19... |
| acaps_secondary_impact_data | ACAPS secondary effects of COVID-19 |
| add_incidence_column | Add daily incidence to cumulative case counts data.frame |
| align_to_baseline | Align case tracking locations (for example) to a common... |
| apple_mobility_data | Access Apple mobility data |
| available_datasets | list and detail available sars2pack datasets |
| beoutbreakprepared_data | Individual-level data contributed from around the world |
| bulk_estimate_Rt | Estimate R(t) for all locales in a case-tracking dataset |
| cci_us_vaccine_data | Vaccine allocations and administrations in the United States |
| cdc_aggregated_projections | Projected deaths from COVID-19 models |
| cdc_excess_deaths | US CDC excess deaths by week from 2018 to present |
| cdc_social_vulnerability_index | US CDC Social Vulnerability Index |
| cdc_us_linelist_data | COVID line list for United States from the CDC |
| column_summaries | convenience function for summarizing data.frame columns |
| combined_us_cases_data | gather US states confirmed cases from multiple sources |
| coronadatascraper_data | Time series cases, hospitalizations, and testing from Corona... |
| coronanet_government_response_data | CoronaNet government policy response database |
| country_metadata | Get basic country data |
| cov_glue_lineage_data | COVID GLUE datasets |
| cov_glue_newick_data | COVID GLUE Newick tree |
| cov_glue_snp_lineage | COVID GLUE snp to lineage and taxon map |
| covidtracker_data | US State-level data including test results |
| create_dataset_details | create data details yaml file for all datasets |
| CRF_468_China | serial interval values fo 468 COVID-19 cases in 93 cities in... |
| datasets_to_sql | Build a data warehouse of all datasets in one line |
| demo_simulation | set up a simulation as demonstrated by John C Mallery |
| descartes_mobility_data | Get US daily mobility data from Descartes Labs |
| dot-melt_econ_tracker_employment | Convert employment data to long form |
| dot-munge_data_from_jhu | simple function to munge JHU data into long-form tibble |
| dot-munge_us_data_from_jhu | simple function to munge JHU US counties data into long-form... |
| dot-remove_df_columns | utility function to remove columns that contain 'data.frame'... |
| ecdc_data | Daily COVID-19 deaths and confirmed cases from the European... |
| economist_excess_deaths | Excess deaths during covid for US and selected countries |
| econtracker | Econ tracker information |
| econ_tracker_consumer_spending | United States Consumer Spending |
| econ_tracker_employment | United States Employment Data from Econ Tracker and... |
| econ_tracker_unemp_data | Econ Tracker Unemployment Insurance Claims |
| enriched_jhu_data | Get enriched jhu dataset enriched with country-level metadata |
| estimate_R | estimate R0 |
| estimate_Rt | Estimate R(t) from cumulative case time series |
| financial_times_excess_deaths | Excess deaths tracking by Financial Times |
| get_series | supersimple series extraction |
| google_mobility_data | Google mobility dataset |
| google_search_trends_data | Google search trends for COVID-19 and illness-related terms |
| government_policy_timeline | Longitudinal tracking of government interventions to combat... |
| growth_rate_ratio | Estimate the growth rate ratio |
| integer_to_fips | convert an integer to fips |
| jhu_data | Global COVID-19 data from JHU CSSEGIS |
| jhu_data_to_excel | Create +/- write excel format of enriched JHU global data |
| jhu_us_data | US counties COVID-19 data from JHU CSSEGIS |
| kff_icu_beds | Kaiser Family Foundation US County-level ICU bed data |
| ls_github | do an ls of a github repo |
| make_cumulative_events | generic cumulative_events generator |
| mar19df | march 19 result of CSSEGISandData/COVID-19/ time series data... |
| mar19dt | march 19 result of CSSEGISandData/COVID-19/ time series data... |
| min_bic_2020_05_20 | a statewide collection of best AR/MA model orders |
| nytimes_county_data | United States county and state level data from the New York... |
| oecd_unemployment_data | OECD International unemployment statistics |
| owid_data | Our world in data worldwide cases and tests |
| param_estimates_published | Published parameter estimates from the literature |
| plot2 | generic for simpler plotter for R0.sR |
| plot2.R0.sR | version of R0:::plot.R0.sR that does not use dev.new |
| plot_epicurve | Plot a (set of) epidemic curve(s) |
| plotfit2 | generic for simpler plotter for plotfit for R0.sR |
| plotfit2.R0.sR | version of R0:::plotfit.R0.sR that does not use dev.new |
| plot_series | supersimple series plotter |
| s2p_get_cache | get the BiocFileCache for sars2pack |
| sars2pack-package | sars2pack: Easy access to and use of iconic COVID-19 data... |
| si_cens_G | MCMC-based model for SI, Gamma family used for censored-data... |
| si_cens_L | MCMC-based model for SI, lognormal family used for... |
| si_cens_W | MCMC-based model for SI, Weibull family used for... |
| si_pos_G | MCMC-based model for SI, Gamma family used for positive-data... |
| si_pos_L | MCMC-based model for SI, lognormal family used for... |
| si_pos_W | MCMC-based model for SI, Weibull family used for... |
| test_and_trace_data | Contact tracing counts for United States from... |
| test_data_accessor | Check a dataset to see if it matches the expected output |
| trim_leading_values | trim leading repeats of a given value from a vector |
| usa_facts_data | United States state and county level data from USAFacts |
| us_county_geo_details | United States county-level geographic details |
| us_county_health_rankings | United States county health rankings |
| us_healthcare_capacity | United States healthcare system capacity by provider |
| us_hospital_details | US hospital dataset |
| us_population_details | Retrieve United States Population data from the US Census... |
| us_state_distancing_policy | United States social distancing policies for COVID-19 |
| who_cases | Global case tracking from the World Health Organization (WHO) |
| world_population_data | World population details from United Nations |
