Files in seandavi/sars2pack

COVID-19 data resources and analysis tools

.Rbuildignore

.dockerignore

.github/.gitignore

.github/ISSUE_TEMPLATE/bug-report-or-problem.md .github/ISSUE_TEMPLATE/new-data-resource.md .github/ISSUE_TEMPLATE/question-or-comment.md

.github/workflows/R-CMD-check.yaml

.github/workflows/blank.yml

.github/workflows/pkgdown.yaml

.gitignore

DESCRIPTION

LICENSE

LICENSE.md

NAMESPACE

NEWS.md R/acaps_government_measures_data.R R/acaps_secondary_impact_data.R R/add_incidence_column.R R/align_to_baseline.R R/apple_mobility_data.R R/beoutbreakprepared.R R/bls_unemployment_data.R R/caching.R R/cci_us_vaccine_data.R R/cdc_aggregated_projections.R R/cdc_excess_deaths.R R/cdc_social_vulnerability_index.R R/cdc_us_linelist_data.R R/column_summaries.R R/combined_us_cases_data.R R/coronadatascraper_data.R R/coronanet_government_response_data.R R/country_metadata.R R/cov_glue_lineage_data.R R/covid_care_map.R R/covidtracking_com.R R/data.R R/data_catalog.R R/datasets_to_sqlite.R R/datatable.aware.R R/descartes_mobility.R R/ecdc_data.R R/econ_tracker_consumer_spending.R R/econ_tracker_data.R R/econ_tracker_employment.R R/economist_excess_deaths.R R/epicurve.R R/estimate_Rt.R R/fin_times_excess_deaths.R R/geonames.R R/github_utils.R R/google_mobility.R R/google_search_trends_data.R R/growth_rate_ratio.R R/integer_to_fips.R R/jhu_data.R R/jhu_to_excel.R R/kff_icu_beds.R R/make_cumulative_events.R R/nytimes_data.R R/oecd_unemployment_data.R R/owid_data.R R/oxford_govt_policy_timeline.R R/param_estimates_published.R R/plot_epicurve.R R/plotter.R R/sars2pack-package.R R/simdemo.R R/test_and_trace.R R/test_single_dataset.R R/trimLeading.R R/us_counties_gazetteer.R R/us_county_health_rankings.R R/us_hospital_details.R R/us_population_details.R R/us_state_distancing_policy.R R/usa_facts_data.R R/utility_make_test_files.R R/who_cases_data.R R/world_population_data.R README.Rmd README.md

_pkgdown.yml

binder/apt.txt

binder/install.R

binder/runtime.txt

data/CRF_468_China.rda

data/mar19df.rda

data/mar19dt.rda

data/min_bic_2020_05_20.rda

data/si_cens_G.rda

data/si_cens_L.rda

data/si_cens_W.rda

data/si_pos_G.rda

data/si_pos_L.rda

data/si_pos_W.rda

inst/api/Dockerfile

inst/api/README.md inst/api/api.R

inst/data_catalog/catalog.csv

inst/data_catalog/dataset_details.json

inst/data_catalog/dataset_details.yaml

inst/docker/Dockerfile

man/CRF_468_China.Rd man/acaps_government_measures_data.Rd man/acaps_secondary_impact_data.Rd man/add_incidence_column.Rd man/align_to_baseline.Rd man/apple_mobility_data.Rd man/available_datasets.Rd man/beoutbreakprepared_data.Rd man/bulk_estimate_Rt.Rd man/cci_us_vaccine_data.Rd man/cdc_aggregated_projections.Rd man/cdc_excess_deaths.Rd man/cdc_social_vulnerability_index.Rd man/cdc_us_linelist_data.Rd man/column_summaries.Rd man/combined_us_cases_data.Rd man/coronadatascraper_data.Rd man/coronanet_government_response_data.Rd man/country_metadata.Rd man/cov_glue_lineage_data.Rd man/cov_glue_newick_data.Rd man/cov_glue_snp_lineage.Rd man/covidtracker_data.Rd man/create_dataset_details.Rd man/datasets_to_sql.Rd man/demo_simulation.Rd man/descartes_mobility_data.Rd man/dot-melt_econ_tracker_employment.Rd man/dot-munge_data_from_jhu.Rd man/dot-munge_us_data_from_jhu.Rd man/dot-remove_df_columns.Rd man/ecdc_data.Rd man/econ_tracker_consumer_spending.Rd man/econ_tracker_employment.Rd man/econ_tracker_unemp_data.Rd man/economist_excess_deaths.Rd man/econtracker.Rd man/enriched_jhu_data.Rd man/estimate_R.Rd man/estimate_Rt.Rd

man/figures/africa_geo.png

man/figures/cc_ts_plot_log-1.png

man/figures/epicurve_and_model.png

man/financial_times_excess_deaths.Rd man/get_series.Rd man/google_mobility_data.Rd man/google_search_trends_data.Rd man/government_policy_timeline.Rd man/growth_rate_ratio.Rd man/integer_to_fips.Rd man/jhu_data.Rd man/jhu_data_to_excel.Rd man/jhu_us_data.Rd man/kff_icu_beds.Rd man/ls_github.Rd man/make_cumulative_events.Rd man/mar19df.Rd man/mar19dt.Rd man/min_bic_2020_05_20.Rd man/nytimes_county_data.Rd man/oecd_unemployment_data.Rd man/owid_data.Rd man/param_estimates_published.Rd man/plot2.R0.sR.Rd man/plot2.Rd man/plot_epicurve.Rd man/plot_series.Rd man/plotfit2.R0.sR.Rd man/plotfit2.Rd man/s2p_get_cache.Rd man/sars2pack-package.Rd man/si_cens_G.Rd man/si_cens_L.Rd man/si_cens_W.Rd man/si_pos_G.Rd man/si_pos_L.Rd man/si_pos_W.Rd man/test_and_trace_data.Rd man/test_data_accessor.Rd man/trim_leading_values.Rd man/us_county_geo_details.Rd man/us_county_health_rankings.Rd man/us_healthcare_capacity.Rd man/us_hospital_details.Rd man/us_population_details.Rd man/us_state_distancing_policy.Rd man/usa_facts_data.Rd man/who_cases.Rd man/world_population_data.Rd tests/testthat.R tests/testthat/test_accessor_acaps_secondary_impact_data.R tests/testthat/test_accessor_apple_mobility_data.R tests/testthat/test_accessor_beoutbreakprepared_data.R tests/testthat/test_accessor_cci_us_vaccine_data.R tests/testthat/test_accessor_cdc_aggregated_projections.R tests/testthat/test_accessor_cdc_excess_deaths.R tests/testthat/test_accessor_cdc_social_vulnerability_index.R tests/testthat/test_accessor_cdc_us_linelist_data.R tests/testthat/test_accessor_coronadatascraper_data.R tests/testthat/test_accessor_coronanet_government_response_data.R tests/testthat/test_accessor_country_metadata.R tests/testthat/test_accessor_cov_glue_lineage_data.R tests/testthat/test_accessor_cov_glue_newick_data.R tests/testthat/test_accessor_covidtracker_data.R tests/testthat/test_accessor_descartes_mobility_data.R tests/testthat/test_accessor_ecdc_data.R tests/testthat/test_accessor_econ_tracker_consumer_spending_city_data.R tests/testthat/test_accessor_econ_tracker_consumer_spending_county_data.R tests/testthat/test_accessor_econ_tracker_consumer_spending_national_data.R tests/testthat/test_accessor_econ_tracker_consumer_spending_state_data.R tests/testthat/test_accessor_econ_tracker_employment_city_data.R tests/testthat/test_accessor_econ_tracker_employment_county_data.R tests/testthat/test_accessor_econ_tracker_employment_national_data.R tests/testthat/test_accessor_econ_tracker_employment_state_data.R tests/testthat/test_accessor_econ_tracker_unemp_city_data.R tests/testthat/test_accessor_econ_tracker_unemp_county_data.R tests/testthat/test_accessor_econ_tracker_unemp_national_data.R tests/testthat/test_accessor_econ_tracker_unemp_state_data.R tests/testthat/test_accessor_economist_excess_deaths.R tests/testthat/test_accessor_financial_times_excess_deaths.R tests/testthat/test_accessor_google_mobility_data.R tests/testthat/test_accessor_google_search_trends_data.R tests/testthat/test_accessor_government_policy_timeline.R tests/testthat/test_accessor_jhu_data.R tests/testthat/test_accessor_jhu_us_data.R tests/testthat/test_accessor_kff_icu_beds.R tests/testthat/test_accessor_nytimes_county_data.R tests/testthat/test_accessor_nytimes_state_data.R tests/testthat/test_accessor_oecd_unemployment_data.R tests/testthat/test_accessor_owid_data.R tests/testthat/test_accessor_param_estimates_published.R tests/testthat/test_accessor_test_and_trace_data.R tests/testthat/test_accessor_us_county_geo_details.R tests/testthat/test_accessor_us_county_health_rankings.R tests/testthat/test_accessor_us_healthcare_capacity.R tests/testthat/test_accessor_us_hospital_details.R tests/testthat/test_accessor_us_state_distancing_policy.R tests/testthat/test_accessor_usa_facts_data.R tests/testthat/test_accessor_who_cases.R tests/testthat/test_accessor_world_population_data.R tests/testthat/test_plotting.R tests/testthat/test_utils.R

vignettes/.gitignore

vignettes/REFERENCES.bib

vignettes/overview.Rmd

vignettes/testing.bib

seandavi/sars2pack documentation built on May 13, 2022, 3:41 p.m.