cromwellOutputs: Get output paths associated with one or more workflow ids

In seandavi/wdlRunR: Interact with the Broad Institute Cromwell workflow manager

Description

Get output paths associated with one or more workflow ids

Usage

cromwellOutputs(ids, ...)

Arguments

ids	a character vector of Cromwell ids. See cromwellQuery for details of how to query Cromwell for available ids.
...	passed directly to httr 'POST' (for including 'timeouts', 'handles', etc.)

Value

a list of output lists.

References

https://github.com/broadinstitute/cromwell#get-apiworkflowsversionidoutputs

Examples

## Not run: 
res = cromwellQuery(terms=c(status='Succeeded',name='taskName'))
head(res)
outfilelist = cromwellOutputs(res$id)
str(outfilelist,list.len=5)

## End(Not run)

seandavi/wdlRunR documentation built on Oct. 28, 2021, 12:42 a.m.