topo.matrix: Estimate the topology distance for all pairs of trees in a...
In sebastianduchene/ClockstaR: ClockstaR: choosing the number of relaxed-clock models in molecular phylogenetic analysis
Description
Usage
Arguments
Value
Author(s)
See Also
Description
topo.matrix estimates the topology distance for all paris of trees in a list. It returns an object of class topo with the pairswise distances and the scaling factors. The scaling factors represent the differences in the magnitude of the rates among trees. See the help file for dist.topo for more details.
Usage
1
topo.matrix(tree.list)
Arguments
tree.list
A list of trees. It can be a list where each item is a tree, or an object of class multiPhylo. The trees can have names. See the example bellow.
Value
An object of class 'topomat', which is a list with
topo.mat
An object of class topomat. This is a list with a distance object for the pairwise tree distances
Author(s)
Sebastian Duchene
See Also
dist.topo from package ape
sebastianduchene/ClockstaR documentation built on May 29, 2019, 4:57 p.m.
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Description Usage Arguments Value Author(s) See Also
Description
topo.matrix estimates the topology distance for all paris of trees in a list. It returns an object of class topo with the pairswise distances and the scaling factors. The scaling factors represent the differences in the magnitude of the rates among trees. See the help file for dist.topo for more details.
Usage
1 | topo.matrix(tree.list)
|
Arguments
tree.list |
A list of trees. It can be a list where each item is a tree, or an object of class multiPhylo. The trees can have names. See the example bellow. |
Value
An object of class 'topomat', which is a list with
topo.mat |
An object of class topomat. This is a list with a distance object for the pairwise tree distances |
Author(s)
Sebastian Duchene
See Also
dist.topo from package ape
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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