dir_flux: Calculate forward/reverse flux

In sebkopf/isocyclr: Model isotope fractionation in biogeochemical cycles and pathways

Description

Convenience function to calculate forward and reverse flux from net flux and reversibility.

Usage

dir_flux(net, reversibility, direction, model_offset = 1e-09)

Arguments

net	the net flux
reversibility	the reversibility of the reaction
direction	whether to go forward ("+") or reverse ("-")
model_offset	completely reversible reactions (reversibility = 1) do not have any net flux so if net is != 0 this is a problem that can be solved at steady-state but not during a model. The model_offset parameter offsets completely reversible reactions from 1 by this small number to make the reaction computationally feasible.

Note

This function uses standard evaluation.

sebkopf/isocyclr documentation built on Nov. 9, 2020, 4:18 p.m.