API for selinj/chromswitch
An R package to detect chromatin state switches from epigenomic data

Global functions
GRangesToCoord Man page Source code
H3K4me3 Man page
LocalPeaks Man page Source code
LocalPeaks-class Man page
NMI Man page Source code
\S4method{peaks}{LocalPeaks} Man page
\S4method{region}{LocalPeaks} Man page
\S4method{samples}{LocalPeaks} Man page
avgSilhouette Source code
binarizePeaks Man page Source code
callBinary Man page Source code
callSummary Man page Source code
chromswitch Man page
chromswitch-package Man page
classEntropy Man page Source code
cluster Man page Source code
clusterEntropy Man page Source code
clusterValidityPerK Source code
completeness Man page Source code
conditionalClassEntropy Man page Source code
conditionalClusterEntropy Man page Source code
contingencyTable Source code
coordToGRanges Man page Source code
estimateState Source code
filterPeaks Man page Source code
filterSamplePeaks Source code
getK Source code
getSamplePeakProfile Source code
getUniquePeaks Source code
homogeneity Man page Source code
internalClusterValidity Source code
isC1AtBottom Source code
isC1AtTop Source code
makeBrowserCoord Man page Source code
normalizePeaks Man page Source code
pReciprocalOverlap Man page Source code
peakOverlap Source code
peaks Man page
peaks,LocalPeaks-method Man page
peaks-method Man page
purity Man page Source code
readNarrowPeak Man page Source code
reducePeaks Man page Source code
region Man page
region,LocalPeaks-method Man page
region-method Man page
retrievePeaks Man page Source code
retrieveSamplePeaks Source code
samples Man page
samples,LocalPeaks-method Man page
samples-method Man page
summarizePeaks Man page Source code
summarizeSamplePeaks Source code
vMeasure Man page Source code
winsorNorm Man page Source code
selinj/chromswitch documentation built on Oct. 29, 2017, 1:21 p.m.