download_assembly_files: download refseq assembly files

In selkamand/utilitybeltrefseq: What the Package Does (One Line, Title Case)

download refseq assembly files

Description

download refseq assembly files

Usage

download_assembly_files(
  target_assembly_accession,
  assembly_file_type = c("genome", "stats", "genome_annotation"),
  output_folder = getwd(),
  refseq_data_frame = load_refseq_data_frame_from_cache()
)

Arguments

target_assembly_accession	accession of assembly you're interested in. For example GCF_000371765.1 (string)
assembly_file_type	type of file to download from refseq repo (string)
output_folder	directory to output file into (string)
refseq_data_frame	do not reccomend changing this. Automatically loads from load_refseq_data_frame_from_cache()

Value

path to downloaded file

Examples

## Not run: 
download_assembly_files(
  target_assembly_accession = "GCF_000371765.1",
  assembly_file_type = "genome"
)

## End(Not run)

selkamand/utilitybeltrefseq documentation built on July 7, 2022, 7:35 a.m.