In hom_plot_counterfactual_by_location()
, also returns violin_plot
object.
In hom_extract_posterior_draws()
, also takes optional location_labels
variable.
In seir_model_fit()
, also takes optional likelihood_type
variable.
In seir_model_fit()
, also takes optional seed
variable.
New hom_plot_critical_times_by_location()
plots critical time by location.
In hom_plot_r0_by_location()
, also takes optional sort
variable.
In hom_plot_zeta_by_location()
, also takes optional sort
variable.
In hom_plot_incidence_by_location()
, also takes optional sort
variable.
In seir_model_fit()
, also takes optional chains
and fit_type
variable (#28).
New BC_OSABC_facilitydata
meta-data on facilities in BC (#24).
New BC_LTHC_outbreaks_100Imputs
data on facility outbreaks in BC (#24).
New create_pub_tables()
create tibble of $R_0$, $\zeta$ and critical time for variable number of models (#21).
New hom_plot_counterfactual_by_location()
plot counterfactual and predictive distribution (#17).
New prior_list
list of parameterizations of priors that can be added to seir_model_fit()
.
In seir_model_fit()
, also takes optional priors
variable (#1).
New hom_plot_incidence_by_location()
plots posterior predictive distribution of incidence with incidence data by location.
New hom_plot_zeta_by_location()
plots model marginal posterior of intervention strength zeta by location with predictive marginal distribution.
New hom_plot_r0_by_location()
plots model marginal posterior of r0 by location with predictive marginal distribution.
New hom_extract_posterior_draws()
simplifies extraction of posterior from rstan fit.
New seir_model_fit()
provides mechanism for fitting multiple outbreaks.
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