CnR_H3K27ac_picard: Example Picard duplication metrics file 2

In serachoi1230/EpiCompare: Comparison, Benchmarking & QC of Epigenomic Datasets

Example Picard duplication metrics file 2

Description

Duplication metrics output on CUT&Run H3K27ac file (sample accession: SRR8581604). Raw sequences were aligned to hg19 genome and after, Picard was performed by Leyla Abbasova. The duplication summary output generated by Picard was processed to reduce the size of data.

Usage

data("CnR_H3K27ac_picard")

Format

An object of class data.frame with 1 rows and 10 columns.

Source

The code to prepare the .Rda file is:

picard <- read.table("path/to/picard/duplication/output", header = TRUE, fill = TRUE)
CnR_H3K27ac_picard <- picard[1,]
usethis::use_data(CnR_H3K27ac_picard, overwrite = TRUE)

serachoi1230/EpiCompare documentation built on Jan. 30, 2024, 11:37 a.m.