prepare_blacklist: Prepare blacklist as GRanges

View source: R/prepare_blacklist.R

prepare_blacklistR Documentation

Prepare blacklist as GRanges

Description

Selects the appropriate blacklist in a variety of conditions.

Usage

prepare_blacklist(
  blacklist,
  output_build,
  blacklist_build = NULL,
  verbose = TRUE
)

Arguments

output_build

Desired genome build for grlist to be lifted over to.

blacklist_build

Genome build of the blacklist. Only used when blacklist is a user-supplied GRanges object.

verbose

Print messages.

Value

A GRanges objects of blacklisted genomic regions from the relevant genome build.


serachoi1230/EpiCompare documentation built on Jan. 30, 2024, 11:37 a.m.