get_insertion_point: Get insertion point of somas

In sergioluengosanchez/EMS_clustering: SomaSimulation: Clustering and simulation of soma morphologies

Description

Apply Gaussian mixture models to segment soma from dendrites

Usage

get_insertion_point(path_complete_neuron, path_soma, path_off_export,
  num_curves)

Arguments

directory	path to the folder where PLY files of the somas are saved
output_shape_diameter	path to the folder where somas with shape diameter will be saved
broken_mesh	path to the folder where somas will be saved after that the GMM threshold removes the dendrites
output_poisson_reconstruction	path to the folder where somas will be saved after the mesh closing process
final_result	path to the folder where final segmented somas will be saved after the isolated pieces are removed

Value

None

Examples

path <- "/home/universidad/RStudio Projects/SomaSimulation/data"
soma_parameters <- get_insertion_point(path_complete_neuron = file.path(path,"ao_results"), path_soma = file.path(path, "sdf_results"), path_off_export = file.path(tempdir(),"soma_off_files"), num_curves = 6)

sergioluengosanchez/EMS_clustering documentation built on May 31, 2019, 10:37 a.m.