Man pages for seshadrilab/COMPASSHelpers
Collection of helper functions for analyzing FCM data

addBooleanGateAdds boolean gate to the GatingSet or GatingSetList
boxplot.boolean.subset.proportionsBoxplot of the difference in cell proportions for a given...
boxplot.cell.countsPlot cell counts for each sample (default CD3+ cells)
boxplotsCompassSubsetBgCorrPropStratifiedCreate Stratified Boxplots of the Background Corrected...
boxplot.subset.proportion.statsStratified Boxplots of the Proportion of the Boolean/Existing...
compass.subset.comparisonsCOMPASS Subset Comparisons
cytokine.specific.subset.comparisonCytokine-specific Subset Comparison
fs.line.plotLine plot of Functionality Score vs. some other axis
fs.plotPlot of Functionality Score vs some other axis
generic.compass.wrapperCOMPASS Wrapper
getCatsAndSubsetNamesFormat COMPASS Categories
highlight.boolean.subset.flow.plotOverlay and Highlight Polyfunctional Cell Subsets on a Flow...
lineplot.boolean.subset.proportionslineplot.boolean.subset.proportions
orderHeatmapColumnsByCytokinePresenceOrder COMPASSresult categories columns for cytokine of...
prepare.gating.set.list.4.compassPrepare flow data for COMPASS
run.compass.onceRun COMPASS once
runOneSenseA function to run One-SENSE. Has an additional...
runTSNERun tSNE from (R pkg 'Rtsne' or 'Rtsne.multicore') on a...
sampleGatingSetForTsneSample a GatingSet
seshadrilab/COMPASSHelpers documentation built on June 14, 2018, 9:09 a.m.