heatmap_anatomy: heatmap for set of cells on nblast anatomy distance

In sfrechter/physplit.analysis: Packaged and versioned Analysis functions for Shahar's cells

Description

heatmap for set of cells on nblast anatomy distance

Usage

heatmap_anatomy(x, col = jet.colors(20), labRow = NULL, labCol = NULL,
  ColSideColors, RowSideColors, heatmapfun = heatmap, ...)

Arguments

x	A score matrix calculated by nblast_allbyall
col	Character vector of colour levels generated by a colour palette function such as jet.colors. Defaults to jet.colors(20).
labRow	character vectors with row and column labels to use; these default to rownames(x) or colnames(x), respectively.
labCol	character vectors with row and column labels to use; these default to rownames(x) or colnames(x), respectively.
ColSideColors	(optional) character vector of length ncol(x) containing the color names for a horizontal side bar that may be used to annotate the columns of x.
RowSideColors	(optional) character vector of length nrow(x) containing the color names for a vertical side bar that may be used to annotate the rows of x.
heatmapfun	Which heatmap function to use. There are many besides the default heatmap. See examples.
...	additional arguments passed on to image, e.g., col specifying the colors.

sfrechter/physplit.analysis documentation built on May 29, 2019, 8:02 p.m.