Files in sgaichas/atlantisdiagnostics
Process Atlantis model output and implements model performance diagnostics
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/secretScan.yml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/agg_custom.R
R/atlantisdiagnostics.r
R/calc_mef.R
R/check_param_files.R
R/check_species_codes.R
R/compare_spatial_vars.R
R/diag_cohortBiomass.r
R/diag_combine.R
R/diag_fleet_catch.R
R/diag_footprints.R
R/diag_maxsize.R
R/diag_maxsize_txt.R
R/diag_persistence.R
R/diag_reasonability.R
R/diag_stability.R
R/diag_temp_thresholds.R
R/errorChecking.R
R/get_atl_paramfiles.R
R/get_forcing_temperature.R
R/get_model_biomass.R
R/get_param_FXXX_SY.R
R/get_param_move_temp.R
R/get_param_recruit_hdistrib.R
R/get_param_recruit_vdistrib.R
R/get_param_vert.R
R/get_rawdata.R
R/get_run_prm.R
R/helper_fns.R
R/helperfiles.r
R/load_nc_temp.R
R/make_atlantis_diagnostic_figures.R
R/plot_biomass_box_summary.R
R/plot_overall_predation.R
R/process_atl_output.R
R/process_catch_fleet.R
README.md
_pkgdown.yml
man/atlantisdiagnostics-package.Rd
man/compare_spatial_vars.Rd
man/diag_cohortBiomass.Rd
man/diag_combine.Rd
man/diag_fleet_catch.Rd
man/diag_footprints.Rd
man/diag_maxsize.Rd
man/diag_persistence.Rd
man/diag_reasonability.Rd
man/diag_stability.Rd
man/diag_temp_thresholds.Rd
man/get_atl_paramfiles.Rd
man/get_forcing_temperature.Rd
man/get_param_FXXX_SY.Rd
man/get_param_move_temp.Rd
man/get_param_recruit_hdistrib.Rd
man/get_param_recruit_vdistrib.Rd
man/get_param_vert.Rd
man/get_run_prm.Rd
man/make_atlantis_diagnostic_figures.Rd
man/process_atl_output.Rd
man/process_catch_fleet.Rd
pkgdown/extra.css
vignettes/.gitignore
vignettes/atlantisdiagnostics.Rmd
vignettes/diagnostics.Rmd
vignettes/plotting.Rmd
vignettes/processing.Rmd
