diag_combine: Combine all diagnostic output

In sgaichas/atlantisdiagnostics: Process Atlantis model output and implements model performance diagnostics

Combine all diagnostic output

Description

Using the output from all tests (persistence, stability, reasonability), they are combined into a single data frame

Usage

diag_combine(persistence, stability, reasonability)

Arguments

persistence	Tibble. Output from diag_persistence
stability	Tibble. Output from diag_stability
reasonability	Tibble. Output from diag_reasonability

Value

A data frame

species	The common name of the species/functional group as described in Atlantis input file
code	Atlantis Code for species/functional group
persistence	Indicating pass or failure of persistence test
proportionInitBio	Metric for persistence. The proportion of initial biomass at tminimumBiomass
stability	Indicating pass or failure of stability test
relChange	Metric for stability. Rate of increase relative to t1Biomass(mtperyear/t1Biomass). see diag_stability
reasonability	Indicating pass or failure of reasonability test

sgaichas/atlantisdiagnostics documentation built on June 13, 2025, 6:11 a.m.