process_catch_fleet: Creates post-processing Catch output for Atlantis

In sgaichas/atlantisdiagnostics: Process Atlantis model output and implements model performance diagnostics

Creates post-processing Catch output for Atlantis

Description

Reads in catch output from catch.nc file by species, fleet, box, time

Usage

process_catch_fleet(fishery.prm, catch, groups.file)

Arguments

fishery.prm	string. Path to location of atlantis fishery csv file
catch	string. path to location of atlantis catch output nc file
groups.file	string. path to location of atlantis functional groups csv file

Value

returns a dataframe

species	long species name
fleet	fleet name
polygon	atlantis box/polygon number
time	time step
atoutput	metric tons

Author: Joseph Caracappa

sgaichas/atlantisdiagnostics documentation built on June 13, 2025, 6:11 a.m.