Man pages for sgaichas/atlantisdiagnostics
Process Atlantis model output and implements model performance diagnostics
| atlantisdiagnostics-package | atlantisdiagnostics: Tools for calibrating Atlantis ecosystem... |
| compare_spatial_vars | Creates post-processing output for Atlantis |
| diag_cohortBiomass | Test for distribution of biomass over age class |
| diag_combine | Combine all diagnostic output |
| diag_fleet_catch | Test fleet catch |
| diag_footprints | Compares the redistribution footprints for groups in the... |
| diag_maxsize | Test for max fish size |
| diag_persistence | Test for functional group persistence |
| diag_reasonability | Test for functional group reasonability |
| diag_stability | Test for functional group stability |
| diag_temp_thresholds | Compares the temperature forcing data to the Group... |
| get_atl_paramfiles | Creates a dataframe of atlantis parameter files based on... |
| get_forcing_temperature | Read in temperature forcing by box or from output.nc |
| get_param_FXXX_SY | Get adult distribution (FXXX_SY) values from a biology prm... |
| get_param_move_temp | Get min_move_temp & max_move_temp values from a biology prm... |
| get_param_recruit_hdistrib | Get horizontal distribution recruitment values from a biology... |
| get_param_recruit_vdistrib | Get vertical distribution recruitment values from a biology... |
| get_param_vert | Get adult distribution (vertDAY_XXX, vertNIGHT_XXX) values... |
| get_run_prm | Get parameters from the run prm file |
| make_atlantis_diagnostic_figures | Creates standard diagnostic figures for Atlantis output |
| process_atl_output | Creates post-processing output for Atlantis |
| process_catch_fleet | Creates post-processing Catch output for Atlantis |
