monoisotopic-methods: Monoisotopic Peak Detection

Description Arguments See Also

Description

This method looks for monoisotopic peaks in a MassPeaks object.

Arguments

object

a MassPeaks object or a list of MassPeaks objects

chargeState

z, charge states used to look for isotopic pattern

isotopicDistance

z, distance between two isotopic mass (chargeState == 1)

tolerance

allowed difference (in Dalton) between measured and calculated isotopic mass

intensityTolerance

allowed difference between measured and calculated isotopic intensities

SNR

double, minimal signal-to-noise ratio of most intense peak in an isotopic pattern. (default: averagineTable)

referenceTable

data.frame, reference table of isotopic pattern (default: averagineTable)

See Also

MassPeaks, detectPeaks,MassSpectrum-method, averagineTable, uniProtTable


sgibb/MALDIquantTools documentation built on May 26, 2017, 6:55 a.m.