createUniProtReferenceTable-functions: Create reference table

In sgibb/MALDIquantTools: Additional tools for MALDIquant

Description

This function creates an UniProt reference table for monoisotopic,MassPeaks-method.

Usage

  createUniProtReferenceTable(file, organism = 9606,
    keyword = 181, reviewed,
    aminoacids = c("A", "R", "N", "D", "C", "E", "Q", "G", "H", "I", "L", "K", "M", "F", "P", "S", "T", "W", "Y", "V"),
    progressBar = TRUE)

Arguments

file	file path to downloaded table (if missing an automatically download is started).
organism	numeric, organism in UniProt Database.
keyword	numeric, keyword in UniProt Database.
reviewed	logical, if missing both reviewed and non reviewed proteins are downloaded.

Value

data.frame

References

http://www.uniprot.org/

See Also

uniProtTable, averagineTable, createAveragineReferenceTable

sgibb/MALDIquantTools documentation built on Oct. 18, 2019, 8:02 p.m.